Job Description P0AED7 Confidence 100.00% Date Thu Jan 5 11:23:04 GMT 2012 Rank 1 Aligned Residues 372 % Identity 56% Template c1vgyB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		C	P	V	I	E	L	T	Q	Q	L	I	R	R	P	S	L	S	P	D	D	A	G	C	Q	A	L	L	I	E	R	L	Q	A	I	G	F	T	V	E	R	M	D	F	A	D	T	Q	N	F	W	A	W	R	G	Q	G	.	E	T	L	A	F	A	G	H	T	D	V	V	P	P	G	D	A	D	R	W	I	N	P
Query Conservation																																																										.
Alig confidence																																																										.
Template Conservation
Template Sequence		T	Q	S	L	E	L	A	K	E	L	I	S	R	P	S	V	T	P	D	D	R	D	C	Q	K	L	X	A	E	R	L	H	K	I	G	F	A	A	E	E	X	H	F	G	N	T	K	N	I	W	L	R	R	G	T	K	A	P	V	V	C	F	A	G	H	T	D	V	V	P	T	G	P	V	E	K	W	D	S	P
Template Known Secondary structure		S											T	S			B	T	T			T	T											T	T	T								B	T	T	B									S	S	S	S										B					S	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	E	P	T	I	R	D	G	M	L	F	G	R	G	A	A	D	M	K	G	S	L	A	A	M	V	V	A	A	E	R	F	V	A	Q	H	P	N	H	T	G	R	L	A	F	L	I	T	S	D	E	E	A	S	A	H	N	G	T	V	K	V	V	E	A	L	M	A	R	N	E	R	L	D	Y	C	L	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	E	P	A	E	R	D	G	R	L	Y	G	R	G	A	A	D	X	K	T	S	I	A	C	F	V	T	A	C	E	R	F	V	A	K	H	P	N	H	Q	G	S	I	A	L	L	I	T	S	D	E	E	G	D	A	L	D	G	T	T	K	V	V	D	V	L	K	A	R	D	E	L	I	D	Y	C	I	V	G
Template Known Secondary structure		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		S	S	S			T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	S	S	I	E	V	V	G	D	V	V	K	N	G	R	R	G	S	L	T	C	N	L	T	I	H	G	V	Q	G	H	V	A	Y	P	H	L	A	D	N	P	V	H	R	A	A	P	F	L	N	E	L	V	A	I	E	W	D	Q	G	N	E	F	F	P	A	T	S	M	Q	I	A	N	I	Q	A	G	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	T	A	V	D	K	L	G	D	X	I	K	N	G	R	R	G	S	L	S	G	N	L	T	V	K	G	K	Q	G	H	I	A	Y	P	H	L	A	I	N	P	V	H	T	F	A	P	A	L	L	E	L	T	Q	E	V	W	D	E	G	N	E	Y	F	P	P	T	S	F	Q	I	S	N	I	N	G	G	T	G
Template Known Secondary structure					B	S	S	S	T	T	S																			B				T	T		G	G	G		B																							S	S																S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	N	V	I	P	G	E	L	F	V	Q	F	N	F	R	F	S	T	E	L	T	D	E	M	I	K	A	Q	V	L	A	L	L	E	K	H	Q	L	R	Y	T	V	D	W	W	L	S	G	Q	P	F	L	T	A	R	G	K	L	V	D	A	V	V	N	A	V	E	H	Y	N	E	I	K	P	Q	L	L	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	N	V	I	P	G	E	L	N	V	K	F	N	F	R	F	S	T	E	S	T	E	A	G	L	K	Q	R	V	H	A	I	L	D	K	H	G	V	Q	Y	D	L	Q	W	S	C	S	G	Q	P	F	L	T	Q	A	G	K	L	T	D	V	A	R	A	A	I	A	E	T	C	G	I	E	A	E	L	S	T	T
Template Known Secondary structure			T	T				S												T	T	S																T	T																		S	S															S	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	T	S	D	G	R	F	I	A	R	M	G	A	Q	V	V	E	L	G	P	V	N	A	T	I	H	K	I	N	E	C	V	N	A	A	D	L	Q	L	L	A	R	M	Y	Q	R	I	M	E	Q	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	T	S	D	G	R	F	I	K	A	X	A	Q	E	L	I	E	L	G	P	S	N	A	T	I	H	Q	I	N	E	N	V	R	L	N	D	I	P	K	L	S	A	V	Y	E	G	I	L	V	R	L	L
Template Known Secondary structure		S				T					G	G	G									S	B		T	T	T	T	S	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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