Job Description P21517 Confidence 100.00% Date Thu Jan 5 11:38:27 GMT 2012 Rank 102 Aligned Residues 316 % Identity 17% Template d3dhpa2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.50

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		178	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																									.	.	.	.	.	.	.	.
Query SS confidence											.																									.	.	.	.	.	.	.	.
Query Sequence		D	L	D	G	I	S	E	K	L	.	P	Y	L	K	K	L	G	V	T	A	L	Y	L	N	P	V	F	K	A	P	S	V	H	K	.	.	.	.	.	.	.	.	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V
Query Conservation											.																									.	.	.	.	.	.	.	.
Alig confidence											.																									.	.	.	.	.	.	.	.						.
Template Conservation																																																	.
Template Sequence		R	W	V	D	I	A	L	E	C	E	R	Y	L	A	P	K	G	F	G	G	V	Q	V	S	P	P	N	E	N	V	A	I	H	N	P	F	R	P	W	W	E	R	Y	Q	P	V	S	.	Y	K	L	C	T	R	S	G	N	E	D	E	F	R	N	M	V	T	R	C	N	N	V	G	V	R	I	Y	V	D	A	V
Template Known Secondary structure													T	T	T	T	T	T										S		B	B			T	T	T	T	S		G	G	G	G	G	S	B	S		.	S		S		B	T	T	B															T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.																		.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	H	M	C	G	N	A	V	S	A	G	T	S	S	T	C	G	S	Y	F	N	P	G	S	R	D	F	P	A	V	P	Y	S	G	A	D	F	N	D	G	K	C	K	T	G	S	G	D	I	E	N	Y	N	D	A	T	Q	V	R	D	C	R	L	S	G	L	L	D	L	A	L	G	K	D	Y	V	R	S	K
Template Known Secondary structure			S					T	T	S		S	B	S		B	T	T				B	B	G	G	G	T	B	B	T	T	T	T	B		G	G	G	B		T	T	T			S	S	S	S	B				T	T								S	B	G	G	G				B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.								.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D	G	W	R	L	D	V	V	H	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	.	.	.	.	.	.	.	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence						.	.	.	.						.	.																	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation						.	.	.	.						.	.																	.	.	.	.	.	.	.	.
Template Sequence		I	A	E	Y	.	.	.	.	M	N	H	L	I	.	.	D	I	G	V	A	G	F	R	I	D	A	S	K	H	M	A	.	.	.	.	.	.	.	.	P	G	D	I	K	A	I	L	D	K	L	H	N	L	N	S	N	W	F	P	E	G	S	K	P	F	I	Y	Q	E	V	I	D	L	G	G	E	P	I	K	S
Template Known Secondary structure						.	.	.	.						.	.			T							T	T	G	G	G	S		.	.	.	.	.	.	.	.									T	T						T	T	T	S		T	T													S	S	S	S			G
Template Predicted Secondary structure						.	.	.	.						.	.																	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.					.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
					385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																																											.	.	.
Query SS confidence		.	.	.																																																																											.	.	.
Query Sequence		.	.	.	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F	L	A	N	T	D	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	.	.	.
Query Conservation		.	.	.																																																																											.	.	.
Alig confidence		.	.	.											.																		.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation															.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	Y	F	G	N	G	R	V	T	E	F	K	.	Y	G	A	K	L	G	T	V	I	R	K	W	N	G	E	K	M	.	.	.	.	.	.	.	.	.	.	S	A	L	K	N	W	G	E	G	A	G	F	M	P	S	D	R	A	L	V	F	V	D	N	H	D	N	Q	R	G	H	G	A	G	G	A	S	I	L
Template Known Secondary structure		G	G	G	T	T	T	S							.											T		T	T			G	.	.	.	.	.	.	.	.	.	.	G	G	G	G	G		S	G	G	G	T				T	T	T					S			T	T	G	G	G	T		T	T			T	T
Template Predicted Secondary structure															.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.											.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
					459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.																							.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure		.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	.	G	V	P	C	I	Y	Y	G	D	E	V	G	L	D	G	K	N	D	P	F	C	R	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A
Query Conservation		.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		T	F	A	D	A	R	L	Y	K	M	A	V	G	F	M	L	A	H	P	Y	G	F	T	R	V	M	S	S	Y	R	W	P	R	Y	F	E	N	G	K	D	V	N	D	W	V	G	P	P	N	D	N	G	V	T	K	E	V	T	I	N	P	D	T	T	C	G	N	D	W	V	C	E	H	R	A	R	Q	.	.	.
Template Known Secondary structure			G	G	G														S		S	S								B								T	T			T	T	T	T			S	S			T	T							B		T	T	S		B		T	T	B			G	G	G	S			.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		513	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	Q	R	M	I	A	L	R	K	K
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	R	N	M	V	N	F	R	N	V
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			391	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions