Phyre 2 alignment of P21517 with d2guya2

Job Description P21517
Confidence 100.00% Date Thu Jan 5 11:38:27 GMT 2012

Rank 54 Aligned Residues 365

% Identity 24% Template d2guya2

SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain

Resolution 1.59

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	P	Q	W	A	A	D	Q	I	F	Y	Q	I	F	P	D	R	F	A	R	S	L	P	R	E	A	E	Q	D	H	V	Y	Y	H	H	A	A	G	Q	E	I	I	L	R	D	W	D	E	P	V	T	A	Q	A	G	G	S	T	F	Y	G	G	D	L	D	G	I	S	E	K	L	P	Y	L	K	K	L	G	V	T
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	P	A	D	W	R	S	Q	S	I	Y	F	L	L	T	D	R	F	A	R	T	D	G	S	T	T	A	T	C	N	T	A	D	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	C	G	G	T	W	Q	G	I	I	D	K	L	D	Y	I	Q	G	M	G	F	T
Template Known Secondary structure						T	T													B	T	T			S	S					G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B								T						T	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	196	.	.	.	200	.	.	.	.									.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.
Query Sequence	A	L	Y	L	N	P	V	F	K	.	.	.	.	.	.	.	.	A	P	S	V	H	K	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G	T	G
Query Conservation										.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	I	W	I	T	P	V	T	A	Q	L	P	Q	T	T	A	Y	G	D	A	Y	H	G	Y	W	Q	Q	D	I	Y	S	L	N	E	N	Y	G	T	A	D	D	L	K	A	L	S	S	A	L	H	E	R	G	M	Y	L	M	V	D	V	V	A	N	H	M	G	Y	D	G	A	G	S	S	V	D	Y	S	V	F	K
Template Known Secondary structure															B	T	T	B			T	T	S		S									T	T	S																T	T										S	B					B		G	G	G			G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
	59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

	268					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence	G	.	.	.	.	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D	G	W	R	L	D	V	V	H	M	L	G	E
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																.	.	.	.								.																.
Template Conservation																																																					.	.	.	.								.																.
Template Sequence	P	F	S	S	Q	D	Y	F	H	P	F	C	F	I	Q	N	Y	E	D	Q	T	Q	V	E	D	C	W	L	G	D	N	T	V	S	L	P	D	L	D	T	T	K	D	V	V	K	N	E	W	Y	D	W	.	.	.	.	V	G	S	L	V	S	N	.	Y	S	I	D	G	L	R	I	D	T	V	K	H	V	Q	.
Template Known Secondary structure	S			S	G	G	G	B			S		B				T	T								S	B				S	S					B	B		T	T	S											.	.	.	.								.		T							T	T	G	G	G	S		.
Template Predicted Secondary structure																																																					.	.	.	.								.																.
Template SS confidence
	139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

	344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	.	.	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F	L	A	N	T	D	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C
Query Conservation																																									.	.
Alig confidence	.	.	.	.	.	.	.													.	.	.	.	.																	.	.												.												.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.													.	.	.	.	.																														.												.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	K	D	F	W	P	G	Y	N	K	A	A	G	.	.	.	.	.	V	Y	C	I	G	E	V	L	D	G	D	P	A	Y	T	C	P	Y	Q	N	V	M	D	G	V	L	N	Y	P	.	I	Y	Y	P	L	L	N	A	F	K	S	.	.	.	.	.	.	.	T	S	G	S	M	D	D	L
Template Known Secondary structure	.	.	.	.	.	.	.	G	G	G									T	.	.	.	.	.	S									S						G	G	G	G	G	T	S	S			B				.										S	S	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.													.	.	.	.	.																														.												.	.	.	.	.	.	.
Template SS confidence
								213	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.

	422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L	D	G	K	N	D	P	F	C	R	K	P	F	P	W
Query Conservation
Alig confidence																	.	.																				.
Template Conservation																	.	.																				.
Template Sequence	Y	N	M	I	N	T	V	K	S	D	C	P	D	S	T	L	.	.	L	G	T	F	V	E	N	H	D	N	P	R	F	A	S	Y	T	N	D	.	I	A	L	A	K	N	V	A	A	F	I	I	L	N	D	G	I	P	I	I	Y	A	G	Q	E	Q	H	Y	A	G	G	N	D	P	A	N	R	E	A	T	W	L
Template Known Secondary structure											S	S		G	G	G	.	.	S				S			T	T	S			G	G	G	T				.														S	S	S						T	T	G	G	G	T					S	T	T	T	T				G	G	G
Template Predicted Secondary structure																	.	.																				.
Template SS confidence
	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

	502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K	S	Q	A	L	R	H	G	G	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	G	Y	P	T	D	S	E	L	Y	K	L	I	A	S	A	N	A	I	R	N	Y	A	I	S	K	D	T	G	F	V
Template Known Secondary structure	G	T			T	T	S																					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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