Phyre 2 alignment of P21517 with d2aaaa2

Job Description P21517
Confidence 100.00% Date Thu Jan 5 11:38:27 GMT 2012

Rank 51 Aligned Residues 364

% Identity 23% Template d2aaaa2

SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain

Resolution 2.10

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	I	G	P	Q	W	A	A	D	Q	I	F	Y	Q	I	F	P	D	R	F	A	R	S	L	P	R	E	A	E	Q	D	H	V	Y	Y	H	H	A	A	G	Q	E	I	I	L	R	D	W	D	E	P	V	T	A	Q	A	G	G	S	T	F	Y	G	G	D	L	D	G	I	S	E	K	L	P	Y	L	K	K	L	G
Query Conservation
Alig confidence							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	S	A	A	S	W	.	R	T	Q	S	I	Y	F	L	L	T	D	R	F	G	R	T	D	N	S	T	T	A	T	C	N	T	G	N	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	C	G	G	S	W	Q	G	I	I	D	H	L	D	Y	I	E	G	M	G
Template Known Secondary structure							.	T	T														T	T			S						G	G	G		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T						T	T	T
Template Predicted Secondary structure							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.

	194	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence	V	T	A	L	Y	L	N	P	V	F	K	A	P	.	.	.	.	.	.	.	.	S	V	H	K	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	T	A	I	W	I	S	P	I	T	E	Q	L	P	Q	D	T	A	D	G	E	A	Y	H	G	Y	W	Q	Q	K	I	Y	D	V	N	S	N	F	G	T	A	D	N	L	K	S	L	S	D	A	L	H	A	R	G	M	Y	L	M	V	D	V	V	P	D	H	M	G	Y	A	G	N	G	N	D	V	D	Y	S	V
Template Known Secondary structure																	B	T	T	B		S	T	T	S		S									T	T	T															T	T	T										S	B			B	S	S		G	G	G			G	G	G
Template Predicted Secondary structure
Template SS confidence
	57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

	266	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence	T	G	.	.	.	.	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D	G	W	R	L	D	V	V	H	M	L
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.																																																	.	.	.	.								.
Template Conservation																																																							.	.	.	.								.
Template Sequence	F	D	P	F	D	S	S	S	Y	F	H	P	Y	C	L	I	T	D	W	D	N	L	T	M	V	E	D	C	W	E	G	D	T	I	V	S	L	P	D	L	D	T	T	E	T	A	V	R	T	I	W	Y	D	W	.	.	.	.	V	A	D	L	V	S	N	.	Y	S	V	D	G	L	R	I	D	S	V	L	E	V
Template Known Secondary structure	S	B	S			S	G	G	G	B					B				T	T								S	B				S	S	S				B	B		T	T	S											.	.	.	.								.		T							S		S	T	T	S
Template Predicted Secondary structure																																																							.	.	.	.								.
Template SS confidence
	137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.

	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	.	.	Q	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F	L	A	N	T	D	I	S	Y	D	P	Q	Q	I	D	A	Q
Query Conservation																																										.	.
Alig confidence			.	.	.	.	.	.	.	.										.	.	.	.	.																		.	.													.												.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.										.	.	.	.	.																																.												.	.	.	.	.	.	.
Template Sequence	Q	P	.	.	.	.	.	.	.	.	D	F	F	P	G	Y	N	K	A	.	.	.	.	.	S	G	V	Y	C	V	G	E	I	D	N	G	N	P	A	S	D	C	P	Y	Q	K	V	L	D	G	V	L	N	Y	P	.	I	Y	W	Q	L	L	Y	A	F	E	S	.	.	.	.	.	.	.	S	S	G	S	I	S
Template Known Secondary structure		G	.	.	.	.	.	.	.	.	G	G								.	.	.	.	.		T	S									S						G	G	G	G	G	T	S	S			B				.										S	S	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.										.	.	.	.	.																																.												.	.	.	.	.	.	.
Template SS confidence
	212	.									.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270

	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L	D	G	K	N	D	P	F	C	R	K	P	F
Query Conservation
Alig confidence															.	.																								.
Template Conservation															.	.																								.
Template Sequence	N	L	Y	N	M	I	K	S	V	A	S	D	C	S	.	.	D	P	T	L	L	G	N	F	I	E	N	H	D	N	P	R	F	A	K	Y	T	S	D	.	Y	S	Q	A	K	N	V	L	S	Y	I	F	L	S	D	G	I	P	I	V	Y	A	G	E	E	Q	H	Y	A	G	G	K	V	P	Y	N	R	E	A	T
Template Known Secondary structure														S	.	.		G	G	G	S				S			T	T	S			G	G	G	T				.														S	S	S						T	T	T	T	T	T					T	T	T	T	T				G
Template Predicted Secondary structure															.	.																								.
Template SS confidence
	271	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K	S	Q	A	L	R	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	W	L	S	G	Y	D	T	S	A	E	L	Y	T	W	I	A	T	T	N	A	I	R	K	L	A	I	A	A	D	S	A
Template Known Secondary structure	G	G	G	T	T		T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
	348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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