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Job DescriptionP21517
Confidence100.00%DateThu Jan 5 11:38:27 GMT 2012
Rank67Aligned Residues362
% Identity27%Templated1wzaa2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   119120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  WAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLK. . . . . . . .
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Template Sequence  FEKHGTYYEIFVRSFYDSDGDGI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GDLKGIIEKLDYLNDGDPETIA
Template Known Secondary structure 






GGGS

SSSSS
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T

S
TT

S
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   28.30.........40.........50 .........60.........70..
 
   191........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  KLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGA.
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Template Sequence  DLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEY
Template Known Secondary structure  S


S



SSSS

S
S
GGG

TT



SB

TTST
TT
TT
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   73......80.........90.........100.........110.........120.........130.........140.........150..
 
   270.........280.........290.........300.........310.........320.........330........
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Query Sequence  . . . . . . . . . . . CHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVV
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Template Sequence  RDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGI. . . . AKYWL. . KQGVDGFRLDGA
Template Known Secondary structure  GGGB
B

S




B
SSS
B
STT
SS
TTS
BB
TTS......TT



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   153......160.........170.........180.........190.........200......... 210.... .....220......
 
   339340.........350.........360.........370.........380.. .......390.........400.........410......
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Query Sequence  HMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWL. . QADVEDAAMNYRGFTFPLWGFLANTDISYDPQQI
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Template Sequence  MHIFPPAQYDKNFTWWEKFRQEIEEV. KPVYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFG. . . . . .
Template Known Secondary structure 
TTS
GGGTTTTT.S



S
GGGGTTT
SB
T
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   227..230.........240.........250.. .......260.........270.........280.........290.........
 
   417..420.........430.........440.........450.........460.........470.........480.........490.... .
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Query Sequence  DAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPF. C
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Template Sequence  . FNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGPHEVI
Template Known Secondary structure  .T
TTS


B
BS

TTS

TTT
TTSSS

TTGGGT



SS
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   300.........310.........320.........330.........340.........350.........360.........370........
 
   496...500.... .....510.........520.........
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Query Sequence  RKPFPWQVE. . . . . . . . . . . . . . . . . . . . . . . . KQDTALFALYQRMIALRKKSQALRH
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Template Sequence  REPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHFRNENPVFYT
Template Known Secondary structure  T




SSS

TT


SS

TTTTTT

TT
TTS
GGGT
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   379380.........390.........400.........410.........420.........430......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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