Phyre 2 alignment of P21517 with d1qhoa4

Job Description P21517
Confidence 100.00% Date Thu Jan 5 11:38:27 GMT 2012

Rank 55 Aligned Residues 381

% Identity 23% Template d1qhoa4

SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	G	P	Q	W	A	A	D	Q	I	F	Y	Q	I	F	P	D	R	F	A	R	S	L	P	R	E	A	E	Q	D	H	V	Y	Y	H	H	A	A	G	Q	E	I	I	L	R	D	W	D	E	P	V	T	A	Q	A	G	G	S	T	F	Y	G	G	D	L	D	G	I	S	E	K	L	P	Y	L	K	K	L	G	V
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	S	S	A	S	V	K	G	D	V	I	Y	Q	I	I	I	D	R	F	Y	D	G	D	T	T	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	A	K	S	Y	G	L	Y	D	P	T	K	S	K	W	K	M	Y	W	G	G	D	L	E	G	V	R	Q	K	L	P	Y	L	K	Q	L	G	V
Template Known Secondary structure		T	T	S			T	T								G	G	G	T			S		G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G	T	T		B		T	T	S		S	T	T	S	B											T								T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.															.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.

	195	.	.	.	.	200	.	.	.	.	.	.										.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence	T	A	L	Y	L	N	P	V	F	K	A	P	.	.	.	.	.	.	.	.	.	S	V	H	K	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	T	I	W	L	S	P	V	L	D	N	L	D	T	L	A	G	T	D	N	T	G	Y	H	G	Y	W	T	R	D	F	K	Q	I	E	E	H	F	G	N	W	T	T	F	D	T	L	V	N	D	A	H	Q	N	G	I	K	V	I	V	D	F	V	P	N	H	S	T	P	F	K	A	N	D	S	T	F	A	E	G
Template Known Secondary structure													S	S		S	S	T	T				T	T	S		S									T	T	T																T	T									T	T						B	T	T	B	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

							266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.												.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	.	.	.	.	.	.	.	.	.	.	.	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W
Query Conservation	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.						.	.
Template Conservation																																																																				.	.	.	.						.	.
Template Sequence	G	A	L	Y	N	N	G	T	Y	M	G	N	Y	F	D	D	A	T	K	G	Y	F	H	H	N	G	D	I	S	N	W	D	D	R	Y	E	A	Q	W	K	N	F	T	D	P	A	G	F	S	L	A	D	L	S	Q	E	N	G	T	I	A	Q	Y	L	T	D	A	.	.	.	.	A	V	Q	L	V	.	.	A	H
Template Known Secondary structure	T					T	T						S	S	S		T	T	T			B			S		B		S		T	T								S	B				T	T	T						B		T	T	S											.	.	.	.						.	.		T
Template Predicted Secondary structure																																																																				.	.	.	.						.	.
Template SS confidence
	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.			.	220

	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	M	D	G	W	R	L	D	V	V	H	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F	L	A	N	T	D
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.														.
Template Conservation															.	.	.	.	.	.	.	.														.
Template Sequence	G	A	D	G	L	R	I	D	A	V	K	H	F	N	.	.	.	.	.	.	.	.	S	G	F	S	K	S	L	A	D	K	L	Y	Q	.	K	K	D	I	F	L	V	G	E	W	Y	G	D	D	P	G	T	A	N	H	L	E	K	V	R	Y	A	N	N	S	G	V	N	V	L	D	F	D	L	N	T	V	I	R
Template Known Secondary structure	T							T	T	G	G	G	S		.	.	.	.	.	.	.	.														.															T	T	S	T	T											S	S				B
Template Predicted Secondary structure															.	.	.	.	.	.	.	.														.
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.									.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

	409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L	D
Query Conservation
Alig confidence																										.	.																								.
Template Conservation																										.	.																								.
Template Sequence	N	V	F	G	T	F	T	Q	T	M	Y	D	L	N	N	M	V	N	Q	T	G	N	E	Y	K	.	.	Y	K	E	N	L	I	T	F	I	D	N	H	D	M	S	R	F	L	S	V	N	S	N	.	K	A	N	L	H	Q	A	L	A	F	I	L	T	S	R	G	T	P	S	I	Y	Y	G	T	E	Q	Y	M	A
Template Known Secondary structure				T	S		S	S																	T	.	.	T	G	G	G					S			T	T	S										.														S	S	S						T	T	G	G	G	T
Template Predicted Secondary structure																										.	.																								.
Template SS confidence
	292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

	489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	N	D	P	F	C	R	K	P	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K	S	Q	A	L	R	H
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence	G	G	N	D	P	Y	N	R	G	M	M	P	A	F	.	.	D	T	T	T	T	A	F	K	E	V	S	T	L	A	G	L	R	R	N	N	A	A	I	Q	Y
Template Known Secondary structure			S	T	T	T	T								.	.		T	T	S
Template Predicted Secondary structure															.	.
Template SS confidence
	369	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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