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Job DescriptionP21517
Confidence100.00%DateThu Jan 5 11:38:27 GMT 2012
Rank75Aligned Residues344
% Identity15%Templated1m7xa3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   117..120.........130.........140.........150.........160.........170.........180..... ....190.....
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Query Sequence  PQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEK. LPYLKKLGVT
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Template Sequence  NQFDAPISIYEVHLGSWRRHTDNNFW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSYRELADQLVPYAKWMGFT
Template Known Secondary structure  STTS


TTSS
B
TTT

B..................................

TT
S
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   237..240.........250.........260.. .......270.........280..
 
   196...200........ .210.........220.........230.........240.........250.........260.........270...
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Query Sequence  ALYLNPVFKAPSV. . HKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNP
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Template Sequence  HLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSTL
Template Known Secondary structure  S


S
GGGTTSS
S
GGGS
TT

TTS


STTSSTTGGGS
SSB



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   283......290.........300.........310.........320.........330.........340.........350.........360..
 
   274.....280.........290.........300.........310.........320.........330.........340......... 350.
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Query Sequence  ESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARN. . NM
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . IYNYGRREVSNFLVGN. . . . ALYWIER. FGIDALRVDAVASMIYRGGRENLEAI
Template Known Secondary structure  ..........................
B
TTS.....S




S


TT

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   374.....380......... 390...... ...400.........410.........420..
 
   352.......360.........370.........380.........390.........400.........410.........420.........430.
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Query Sequence  QHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAG
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Template Sequence  EFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHH. . . . . . . DKLTF
Template Known Secondary structure  SSTT


SS

TTTTB
TTTTBS

S
S
GGGGGG
T.......G
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   437..440.........450.........460.........470.........480.........490.........500.... .....
 
   432.......440......... 450.........460.........470.........480.........490.........500.
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Query Sequence  LSHQQQLRMFNQLDSHDT. . . . . . . . . ARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPW.
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Template Sequence  GILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLL
Template Known Secondary structure  GGTTTTTS

GGGSSTTS

S
SSSSSTTTTTT
SS


TTS


GGGG
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   510.........520.........530.........540.........550.........560.........570.........580.........
 
   502.......510.........520.........530..
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Query Sequence  . QVEKQDTALFALYQRMIALRKKSQALRHGGC
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Template Sequence  EGGDNWHHGVQRLVRDLNLTYRHHKAMHELDF
Template Known Secondary structure 
SS

TT
GGGTS
TT
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   590.........600.........610.........620.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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