Phyre 2 alignment of P21517 with d1hjqa

Job Description P21517
Confidence 96.34% Date Thu Jan 5 11:38:27 GMT 2012

Rank 203 Aligned Residues 282

% Identity 13% Template d1hjqa_

SCOP info TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases

Resolution 2.55

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	Y	L	K	K	L	G	V	T	A	L	Y	L	N	P	V	F	K	A	P	S	V	H	K	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.			.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.			.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	Y	I	L	A	E	N	G	V	N	M	V	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	.	W	V	N	P	W	D	G	N	Y	N	L	D	Y	N	I	Q	L	A	R	R	A	K	A	A	G	L	G	L	Y	I	N	F	H	Y	S	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T							.	.	.	.	.	.	.	.	.	.	.	.	.			.		S	S		T	T		T	T	S														T	T										S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.			.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	33	.	.	.	.	.	.	40	.	.	.	.	.	.														.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.							.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.
Query Sequence	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D	G	W	R	L	.	.	.	.	.	.	D	V	V	H
Query Conservation																																																																							.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	A	D	P	A	H	Q	T	T	P	A	G	W	.	.	.	.	.	.	.	.	.	P	S	D	I	N	N	L	A	W	K	L	Y	N	Y	T	L	D	S	M	N	R	F	A	D	A	G	I	Q	V	D	I	V	S	I	G	N	E	I	T	Q	G	L	L	W
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B	T	T	B		B			T	T		.	.	.	.	.	.	.	.	.		S	S																							T									S	S	S		T	T	B	S	S	B
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
															86	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	.	.	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F	L	A	N	T	D	I	S	Y	D	P	Q	Q	I	D
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence	P	L	G	K	T	N	N	W	Y	N	I	A	R	L	L	H	S	A	A	W	G	V	K	D	S	R	L	N	P	K	P	K	I	M	V	H	L	D	N	G	W	N	W	D	T	Q	N	W	W	Y	T	N	V	L	S	Q	G	P	F	E	M	S	D	F	D	M	M	G	V	S	F	Y	P	F	Y	S	A	S	A	T
Template Known Secondary structure	T	T	T	B	T	T																		T	S	S		S	S									S		T	T																S	S	S		G	G	G										S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.											.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	.	.	.	.	.	.	.	.	.	.	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	D	S	L	R	R	S	L	N	N	M	V	S	R	W	G	K	E	V	A	V	V	E	T	N	W	P	T	S	C	P	Y	P	R	Y	Q	F	P	A	D	V	R	N	V	P	F	S	A	A	G	Q	T	Q	Y	I	Q	S	V	A	N	V	V	S	S	V	S	K	G	V	G	L	F	Y	W	E	P	A	W	I	H
Template Known Secondary structure																												S	B		S	S		S	S				G	G	G	T	T	S		S	S																		S	T	T									T	T		G	G
Template Predicted Secondary structure
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

	488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	K	N	D	P	F	C	R	K	P	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	A	N	L	G	S	S	C	A	D	N	T	M	F	T	P	S	G	Q	A	L	S	S	L	S	V	F	H	R	I
Template Known Secondary structure	G	T	T	T	T	S	S	S	S	B			S	B		T	T	S	B	B		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions