Job Description P21517 Confidence 100.00% Date Thu Jan 5 11:38:27 GMT 2012 Rank 99 Aligned Residues 310 % Identity 16% Template d1g94a2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.74

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		178	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure											.																							.	.	.	.
Query SS confidence											.																							.	.	.	.
Query Sequence		D	L	D	G	I	S	E	K	L	.	P	Y	L	K	K	L	G	V	T	A	L	Y	L	N	P	V	F	K	A	P	S	V	.	.	.	.	H	K	Y	D	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S
Query Conservation											.																							.	.	.	.
Alig confidence											.																							.	.	.	.									.
Template Conservation																																														.
Template Sequence		N	W	Q	D	V	A	Q	E	C	E	Q	Y	L	G	P	K	G	Y	A	A	V	Q	V	S	P	P	N	E	H	I	T	G	S	Q	W	W	T	R	Y	Q	P	V	S	Y	.	E	L	Q	S	R	G	G	N	R	A	Q	F	I	D	M	V	N	R	C	S	A	A	G	V	D	I	Y	V	D	T	L	I	N	H	M
Template Known Secondary structure													T					T										S		B	B		S	S	S	G	G	G	G	G	S	B	S		S	.		S		B	T	T	B															T	T										S
Template Predicted Secondary structure																																														.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.
Query Sequence		G	D	S	H	A	W	F	D	R	H	N	R	G	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	.	.	.	.	.	.	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A
Query Conservation																																									.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.																									.	.	.	.						.	.
Template Conservation																																																																							.	.	.	.						.	.
Template Sequence		A	A	G	S	G	T	G	T	A	G	N	S	F	G	N	K	S	F	P	I	Y	S	P	Q	D	F	H	E	S	C	T	I	N	N	S	D	Y	G	N	D	R	Y	R	V	Q	N	C	E	L	V	G	L	A	D	L	D	T	A	S	N	Y	V	Q	N	T	I	A	A	Y	.	.	.	.	I	N	D	L	Q	.	.
Template Known Secondary structure			S	S				B	T	T	S				B	T	T	B		S	S			G	G	G	B					B			T	T												S	B	S	T	T				B		T	T	S											.	.	.	.						.	.
Template Predicted Secondary structure																																																																							.	.	.	.						.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		P	W	N	M	D	G	W	R	L	D	V	V	H	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	.	.	.	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W	G	F
Query Conservation																																																														.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																																		.	.	.									.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		A	I	G	V	K	G	F	R	F	D	A	S	K	H	V	A	.	.	.	.	.	.	.	.	.	.	.	A	S	D	I	Q	S	L	M	A	K	V	N	G	S	P	V	V	F	Q	E	V	I	D	Q	G	G	E	A	V	G	A	S	E	Y	L	S	T	G	L	V	T	E	F	K	.	Y	S	T	E	L	G	N	T
Template Known Secondary structure				T								T	G	G	G	S		.	.	.	.	.	.	.	.	.	.	.										T	S		S											S	S			S	S		G	G	G	G	G	G	G	S							.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180												.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.						.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.
Predicted Secondary structure																																																									.	.	.	.	.																	.
Query SS confidence																																																									.	.	.	.	.																	.
Query Sequence		L	A	N	T	D	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	.	.	.	.	.	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	.	G	V	P
Query Conservation																																																									.	.	.	.	.																	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.																	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	N	G	S	L	A	W	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	N	F	G	E	G	W	G	F	M	P	S	S	S	A	V	V	F	V	D	N	H	D	N	Q	R	G	H	G	G	A	G	N	V	I	T	F	E	D	G	R	L	Y	D	L	A	N	V	F	M	L	A	Y	P	Y	G	Y	P
Template Known Secondary structure					S		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	T	G	G	G	T				G	G	G					S			T	T	G	G	G	T	S	S			T	T	S			G	G	G	T													S		S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240														.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.											.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		C	I	Y	Y	G	D	E	V	G	L	D	G	K	N	D	P	F	C	R	K	P	.	.	.	.	.	.	.	.	.	.	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence		K	V	M	S	S	Y	D	F	H	G	D	T	D	A	G	G	P	N	V	P	V	H	N	N	G	N	L	E	C	F	A	S	N	W	K	C	E	H	R	W	S	Y	.	.	.	.	I	A	G	G	V	D	F	R	N	N
Template Known Secondary structure							B			T	T		T	T					S	S		S			T	T				B	S	S	S	S	B			G	G	G	S			.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.					.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions