Phyre 2 alignment of P21517 with d1avaa2

Job Description P21517
Confidence 100.00% Date Thu Jan 5 11:38:27 GMT 2012

Rank 88 Aligned Residues 319

% Identity 17% Template d1avaa2

SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence	G	G	S	T	F	Y	G	G	D	L	D	G	I	S	E	K	L	P	Y	L	K	K	L	G	V	T	A	L	Y	L	N	P	V	F	K	A	P	S	V	H	K	Y	D	T	E	D	Y	R	H	V	D	P	.	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence	E	S	W	K	H	N	G	G	W	Y	N	F	L	M	G	K	V	D	D	I	A	A	A	G	I	T	H	V	W	L	P	P	A	S	Q	S	V	A	E	Q	G	Y	M	P	G	R	L	Y	D	L	D	A	S	K	Y	G	N	K	A	Q	L	K	S	L	I	G	A	L	H	G	K	G	V	K	A	I	A	D	I	V
Template Known Secondary structure	T	G	G	G		T	T								T	T								T										S		B	S	S	T	T	S	S	S	B			T	T			T	T		T	T																	T
Template Predicted Secondary structure
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.

	249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.								.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence	F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	.	.	.	.	.	.	.	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence	I	N	H	R	T	A	E	H	K	D	G	R	G	I	Y	C	I	F	E	G	G	T	P	D	A	R	L	D	W	G	P	H	M	I	C	R	D	D	R	P	Y	A	D	G	T	G	N	P	D	T	G	A	D	F	G	A	A	P	D	I	D	H	L	N	L	R	V	Q	K	E	L	V	E	W	.	.	.	.	L	N
Template Known Secondary structure		S	B				S				T	T	S								S	S	S	S	S	T	T				G	G	G	B		T	T		T	T	T			S		S				S	S				T	T	S		B	B		T	T	S											.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	W	L	K	A	P	W	N	M	D	G	W	R	L	D	V	V	H	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	F	P	L	W
Query Conservation
Alig confidence						.																.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation						.																.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence	W	L	K	A	D	.	I	G	F	D	G	W	R	F	D	F	A	K	G	Y	S	.	.	.	.	.	.	.	.	A	D	V	A	K	I	Y	I	D	R	S	E	.	.	.	.	P	S	F	A	V	A	E	I	W	T	S	L	A	Y	G	G	D	G	K	P	N	L	N	Q	D	Q	H	R	Q	E	L	V	N	W	V
Template Known Secondary structure					T	.	T								T	T	G	G	G	S		.	.	.	.	.	.	.	.													.	.	.	.		S												B		T	T	S	S	B		S
Template Predicted Secondary structure						.																.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
	166	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

	402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.											.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	F	L	A	N	T	D	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	.	.	.	.	.	.	.	.	.	.	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F
Query Conservation																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	K	V	G	G	K	G	P	A	T	T	F	D	F	T	T	K	G	I	L	N	V	A	V	E	G	E	L	W	R	L	R	G	T	D	G	K	A	P	G	M	I	G	W	W	P	A	K	A	V	T	F	V	D	N	H	D	T	G	S	T	Q	H	M	W	P	F	P	S	D	R	V	M	Q	G	Y	A	Y	I	L
Template Known Secondary structure					T	T	S	S																T	T	T		G	G	G	G	S		T	T	S	S		S	S	G	G	G	T		G	G	G					S			T	T	T	S	T	T	T		S	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L	D	G	K	N	D	P	F	C	R	K	P	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K	S	Q	A
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	H	P	G	T	P	C	I	F	Y	D	H	F	F	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	K	E	E	I	D	R	L	V	S	V	R	T	R	H	G	I
Template Known Secondary structure		S	S	S											T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S															T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																						.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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