Job Description P21517 Confidence 89.88% Date Thu Jan 5 11:38:27 GMT 2012 Rank 277 Aligned Residues 300 % Identity 16% Template c3lrmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase 1; PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		179	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure												.	.																								.	.	.	.										.
Query SS confidence												.	.																								.	.	.	.										.
Query Sequence		L	D	G	I	S	E	K	L	P	Y	.	.	L	K	K	L	G	V	T	A	L	Y	L	N	P	V	F	K	A	P	S	V	H	K	Y	.	.	.	.	D	T	E	D	Y	R	H	V	D	.	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N	T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H
Query Conservation												.	.																								.	.	.	.										.
Alig confidence												.	.												.	.	.	.	.	.	.	.					.	.	.	.										.						.	.																			.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.																								.	.																			.	.	.	.	.
Template Sequence		L	L	D	T	A	D	R	I	S	D	L	G	L	K	D	M	G	Y	K	Y	I	I	L	.	.	.	.	.	.	.	.	D	D	C	W	S	S	G	R	D	S	D	G	F	L	V	A	D	E	Q	K	F	P	N	.	.	G	M	G	H	V	A	D	H	L	H	N	N	S	F	L	F	G	M	.	.	.	.	.	Y
Template Known Secondary structure												T	T		G	G	G	T							.	.	.	.	.	.	.	.		S	S							T	T	S						T	T	T		T	T	.	.												T	T						.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																								.	.																			.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.									.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	D	S	H	A	W	F	D	R	H	N	R	G	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G	E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	A	G	E	Y	T	C	A	G	Y	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	G	R	E	E	E	D	A	Q	F	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	R	V	D
Template Known Secondary structure				S	S	S	B		T	T	S	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.																																				.	.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		G	W	R	L	D	V	V	H	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	E	D	A	A	M	N	Y	R	G	F	T	.	.	.	.	F	P	L	W	G	F	L	A	N	T
Query Conservation																																																																				.	.	.	.
Alig confidence																																																																				.	.	.	.
Template Conservation
Template Sequence		Y	L	K	Y	A	N	C	Y	N	K	G	Q	F	G	T	P	E	I	S	Y	H	R	Y	K	A	M	S	D	A	L	N	K	T	G	R	P	V	F	Y	S	L	C	N	W	G	Q	D	L	T	F	Y	W	G	S	G	I	A	N	S	W	R	M	S	G	D	V	T	A	E	F	T	R	P	D	S	R	C	P	C	D
Template Known Secondary structure								T	T		T	T			S	S																		T	T	S								S	T	T	T	T	T					S	T	T	T		S					S	S		B		S		S	S			B	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	S	Y	D	P	Q	Q	I	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T	W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L
Query Conservation
Alig confidence																																															.	.																		.	.	.										.	.	.	.
Template Conservation																																															.	.																		.	.	.										.	.	.	.
Template Sequence		G	D	E	Y	D	C	K	Y	A	G	F	H	C	S	I	M	N	I	L	N	K	A	A	P	M	G	Q	N	A	G	V	G	G	W	N	D	L	D	N	L	E	V	G	V	G	.	.	N	L	T	D	D	E	E	K	A	H	F	S	M	W	A	M	V	.	.	.	K	S	P	L	I	I	G	A	N	.	.	.	.
Template Known Secondary structure		T	T		S	S		S				S		B										G	G	G	G	G	G		B	T	T	B						S	B		T	T	S	T	.	.	T																T	.	.	.	T							S		.	.	.	.
Template Predicted Secondary structure																																															.	.																		.	.	.										.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.			.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.								.	.	540	.	.	.	.	.	.	.	.	.	550	.		.	.	.	.	.	.
Predicted Secondary structure																													.	.																								.	.	.	.	.	.	.															.
Query SS confidence																													.	.																								.	.	.	.	.	.	.															.
Query Sequence		D	G	K	N	D	P	F	C	R	K	P	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	.	.	Q	R	M	I	A	L	R	K	K	S	Q	A	L	R	H	G	G	C	Q	V	L	Y	A	.	.	.	.	.	.	.	E	D	N	V	V	V	F	V	R	V	L	N	Q	Q	.	R	V	L	V	A	I
Query Conservation																													.	.																								.	.	.	.	.	.	.															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																								.	.	.	.	.	.	.															.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	N	L	K	A	S	S	Y	S	I	Y	S	Q	A	S	V	I	A	I	N	Q	D	S	N	G	I	P	A	T	R	V	W	R	Y	Y	V	S	D	T	D	E	Y	G	Q	G	E	I	Q	M	W	S	G	P	L	D	N	G	D	Q	V	V	A	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G										T									T		T	T													S				T	T	S												T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		558	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	G	E	A	C	E	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	G	S	V	S	R	P	M
Template Known Secondary structure				S	S	S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions