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Job DescriptionP21517
Confidence98.71%DateThu Jan 5 11:38:27 GMT 2012
Rank119Aligned Residues356
% Identity13%Templatec3cc1B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase; PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   178.180........ .190.........200...... ...210.........220.........230.........
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Query Sequence  DLDGISEKLPY. . . . LKKLGVTALYLNPVFKAP. . . . . . . . . . . . . . SVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQL
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Template Sequence  TEEEVLGNAEYXANHLKKYGWEYIVVDIQWYEPTANNPFAPLCXDEYGRLLPATNRFPSAKNGAG. . . . FKPLSDAIHDL
Template Known Secondary structure 
TGGGT


S
TT
TT


TT



B
TTS
B


TTT
GGGTTTTT....TT
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   26...30.........40.........50.........60.........70.........80.........90 .........100.
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  GMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSI
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Template Sequence  GLKFGIHIXRGIPRQAVYENSPVLGST. . . . . . . . . . . . . KTAREIAHTNSICPWNTDXYGVDPTKEGAQSYYNSLFELY
Template Known Secondary structure  T
SST
B
TTSS.............
BTT

BTTB
S
TTSTT
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   106...110.........120.........130.. .......140.........150.........160.........170..
 
   320.........330.........340.........350.........360.........370.........380.........390.........
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Query Sequence  VRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFP
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Template Sequence  A. . . . . . QWGVDFVKVD. . . DIAASRLYDTHLEEIKXIQRAIQACGRPXVLSLSPGPAPIKWRITDDFWDDWSLLYQXFE
Template Known Secondary structure  ......TT

...S
S
BTTB


TSSS





S




TTS
S

S
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   173 ......180... ......190.........200.........210.........220.........230.........240...
 
   400.........410.........420.........430.........440.........450.........460.........470.........
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Query Sequence  LWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCI
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Template Sequence  RCEVWEKHIGTGHWPDCG. . . . . . . . . . . . . . . . . . XLPLGHIGIRSVDGPGGDRWTRFTKDEQLTXXNLWAIC. HSPLX
Template Known Secondary structure  TSS

SS




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B

S
SS
SSSSSSS

S
.T

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   255....260.........270.. .......280.........290.........300.........310 .....
 
   480.........490.........500.........510.... .....520.........530.........540....... ..550......
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Query Sequence  YYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALY. . QRMIALRKKSQALRHGGCQVLYAEDNVVVFVRV. LNQQRVLVA
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Template Sequence  FGGE. . . . . . . . . . . . . . . . . . . LRDNDEWTLSLLTNEGILSINQK. . . . . SVLNRFVYREEDKVAWAANGRNGEAYVAL
Template Known Secondary structure 
S
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SSS
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   316... 320.........330.........340.. .......350.........360.........370.
 
   557..560.... .....570.........580. ........590 .........600..
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Query Sequence  INRGEACE. VVLPASPFLNAVQWQCK. . . . . EGHGQLTDG. . . ILALPAISATVW
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Template Sequence  FNLHDQQKTLQFRLDXVGIXETVQLFNVWDRSFLQSLAPSESFQIELKPHQSXXL
Template Known Secondary structure 
SSS

GGGTT

S
TTT


TT


TT
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   372.......380.........390.........400.........410.........420......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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