Job Description P21517 Confidence 58.92% Date Thu Jan 5 11:38:27 GMT 2012 Rank 483 Aligned Residues 319 % Identity 12% Template c2zq0B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alpha-glucosidase (alpha-glucosidase susb); PDBTitle: crystal structure of susb complexed with acarbose Resolution 1.60 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		D	W	D	E	P	V	T	A	Q	A	G	G	S	T	F	Y	G	G	D	L	D	G	I	S	E	K	L	P	Y	L	K	K	L	G	V	T	A	L	Y	L	N	P	V	F	K	A	P	S	V	H	K	Y	D	.	.	.	.	T	E	D	Y	R	H	V	D	P	Q	F	G	G	D	G	A	L	L	R	L	R	H	N
Query Conservation																																																							.	.	.	.
Alig confidence																																																							.	.	.	.													.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		K	L	G	E	T	D	Y	S	K	T	K	P	N	G	K	H	S	A	N	T	A	N	V	K	R	Y	I	D	F	A	A	A	H	G	F	D	A	V	L	V	E	G	W	N	E	G	W	E	D	W	F	G	N	S	K	D	Y	V	F	D	F	V	T	P	Y	P	D	F	D	.	.	.	.	V	K	E	I	H	R	Y
Template Known Secondary structure			T	T	T			G	G	G	S		B		S		B																	T	T		S						S		B	T	T	G	G	G		S	S	S			S	S				S	S		B		T	T			.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.					420	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	Q	L	G	M	R	L	V	L	D	G	V	F	N	H	S	G	D	S	H	A	W	F	D	R	H	N	R	G	T	G	G	A	C	H	N	P	E	S	P	W	R	D	W	Y	S	F	S	D	D	G	T	A	L	D	W	L	G	Y	A	S	L	P	K	L	D	Y	Q	S	E	S	L	V	N	E	I	Y	R	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	R	K	G	I	K	M	M	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	T	S	A	S	V	R	N	Y	E	R	H
Template Known Secondary structure					T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	B
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.																																																									.	.	440	.	.	.	.	.	.	.	.	.	450
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	S	I	V	R	H	W	L	K	A	P	W	N	M	D	G	W	R	L	D	V	V	H	M	L	G	E	A	G	G	A	R	N	N	M	Q	H	V	A	G	I	T	E	A	A	K	E	T	Q	P	E	A	Y	I	V	G	E	H	F	G	D	A	R	Q	W	L	Q	A	D	V	E	D	A	A	M	N	Y	R	G
Query Conservation
Alig confidence											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	D	K	A	Y	Q	F	M	A	.	.	D	N	G	Y	N	S	V	K	S	G	Y	V	G	N	I	I	P	R	G	E	H	H	Y	G	Q	W	M	N	N	H	Y	L	Y	A	V	K	K	A	A	D	Y	K	I	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	H	E	A	T	R	P	T	G
Template Known Secondary structure											.	.		T	T										S	S		B	S	T	T			T	T	S																	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S					S
Template Predicted Secondary structure											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		451	.	.	.	.	.	.	.	.			460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.															.	.	.	.	.	510	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.				.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		F	T	F	P	L	W	G	F	L	A	N	T	D	I	S	Y	D	P	Q	Q	I	.	.	.	D	A	Q	T	C	M	A	W	M	D	N	Y	R	A	G	L	S	H	Q	Q	Q	L	R	M	F	N	Q	L	D	S	H	D	T	A	R	F	K	T	L	L	G	R	D	I	A	R	L	P	L	A	V	V	W	L	F	T
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		I	C	R	T	Y	P	N	L	I	G	N	E	S	A	R	G	T	E	Y	E	S	F	G	G	N	K	V	Y	H	T	T	I	L	P	F	T	R	L	V	G	G	P	M	D	Y	T	P	G	I	F	E	T	H	C	N	K	M	N	P	A	N	N	S	Q	V	R	S	T	I	A	R	Q	L	A	L	Y	V	T	M	Y
Template Known Secondary structure		G	G	G	T		T	T							S			G	G	G	G	T	T	T				T	T	G	G	G	T	G	G	G	T	T	T	T	T	S		B							S			B	G	G	G	T		T	T				B		S	S												S
Template Predicted Secondary structure
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		W	P	G	V	P	C	I	Y	Y	G	D	E	V	G	L	D	G	K	N	D	P	F	C	R	K	P	F	P	W	Q	V	E	K	Q	D	T	A	L	F	A	L	Y	Q	R	M	I	A	L	R	K	K	S	Q	A	L	R	H	G	G	C	Q	V	L	Y	A	E	D	N	V	V	V	F	V	R	V	L	N	Q	Q	.
Query Conservation																																																																																	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	M	A	A	D	I	P	E	N	Y	E	R	F	M	D	A	F	Q	F	I	K	D	V	A	L	D	W	D	E	T	N	Y	L	E	A	E	P	G	E	Y	I	T	I	A	R	K	A	K	D	T	D
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S								T												S	S											T	T	T									T	T	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		595	.																											.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
			552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	R	V	L	V	A	I	N	R	G	E	A	C	E	V	V	L	P	A	S	P	F	L	N	A	V	Q	W	Q	C
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		D	W	Y	V	G	C	T	A	G	E	N	G	H	T	S	K	L	V	F	D	F	L	T	P	G	K	Q	Y	I	A
Template Known Secondary structure											T	T									T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions