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Job DescriptionP21517
Confidence99.25%DateThu Jan 5 11:38:27 GMT 2012
Rank109Aligned Residues352
% Identity14%Templatec2xn1B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   178.180.........190.........200. ........210.........220.........230.........240.........250......
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Query Sequence  DLDGISEKLPYLKKLGVTALYLNP. VFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSH
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Template Sequence  NEDKLKTIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFPN. . GLGHFADYVHEQGLKFGLWFEPEMISYES
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   348.350.........360.........370.........380.........390...... ...400.........410.........420.....
 
   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  AWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLD
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Template Sequence  NLYKEHPDYLMHVPGRKPCPSRNQYV. . . . . . . . . . . . . . . . . . LELGRKEVRDNIFEQMVKIL. . . . . DSKKIDYIKWD
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BTTB..................B
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   426...430.........440.........450. ........460.........470. ........480..
 
   337..340.........350.. .......360.........370.........380.........390.........400.....
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Query Sequence  VVHMLGEAGGARNNMQ. . . . . . . . . . . HVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLA
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Template Sequence  MNRSLSDIYESDLPADQQGEAYHRYVLGYYDLLNKLVTRYPDILFEGCSGGGGRFDVGQAYYTPQIWAS. . . . . . . . . . .
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   483......490.........500.........510.........520.........530.........540.........550.
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  NTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEV
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Template Sequence  . . . . . . . . DNTDAIERLKIQYGTSLVYPQSMMTSHVSVSPNEQNGRITP. . . . . . . . . . FNTRGAVAMWGDLGYE. . . . .
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   552.......560.........570.........580.........590.. .......600........
 
   486...490.........500.........510.........520.... .....530.........540 .........550.........560.
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Query Sequence  GLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKS. QALRHGGCQVLYAEDN. . . VVVFVRVLNQQRVLVAINRGE
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Template Sequence  . . . . . . . . . . . . . . . LDLTKMSDEESDQVVKQVTEYKKIREVTQFGTLYRLKASASNQCAWMMVDSNKNEAVVTVVNVMA
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   609610.........620.........630.........640.........650.........660.........670...
 
   562.......570.........580.........590. .... ....600...
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Query Sequence  . . . ACEVVLPASPFLNAVQWQCKEGHGQLTDGI. . . . . LALP. . . . AISATVWM
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Template Sequence  HAQPYCTKTKLAGLDPDKRYKNLETDEVFGGDELMHLGFYDPIERGDFKAKMYH
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   674.....680.........690.........700.........710.........720.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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