 |
Job Description | P21517 | Confidence | 70.25% | Date | Thu Jan 5 11:38:27 GMT 2012 |
Rank | 397 | Aligned Residues | 88 |
% Identity | 14% | Template | c1nofA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:xylanase; |
PDBTitle: the first crystallographic structure of a xylanase from2 glycosyl hydrolase family 5: implications for catalysis
|
Resolution | 1.42 Å |
|
 |
  |   |
515 | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | |
|
|
. | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | R | M | I | A | L | R | K | K | S | Q | A | L | R | H | G | G | C | Q | V | L | Y | A | E | D | N | . |
. |
. |
. |
. |
V | V | V | F | V | R | V | L | N | Q | Q | R | V | L | V | A | I | N | R | G | E | A | C | E | . |
. |
. |
V | V | L | P | A | S | P | F | L | N | A | V | Q | W | Q | C | K | E | G | H | G | Q |
Query Conservation |   |
|   |
|
|   |
|
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |
|   |
|
|   |
|   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   | . | . | . |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |
|
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   | . |
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
K | R | G | Y | V | M | S | Q | Y | A | R | F | V | R | P | G | A | L | R | I | Q | A | T | E | N | P | Q | S | N | V | H | L | T | A | Y | K | N | T | . |
D | G | K | M | V | I | V | A | V | N | T | N | D | S | D | Q | M | L | S | L | N | I | S | N | A | N | V | T | K | F | E | K | Y | S | T | S | A | S | L | N | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T | S |
| T | T |
|  |  |  |  |  |
| S |
| S | B | T | T |  |  |  |  |  |  |  |
| T | . | T | S |
|  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |  |  | S |
|
|
|
|  |  |  |  |  |  |  | S | S | S |
| S | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
306 | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | |
. | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . |
  |
  |   |
587 | |
|
|
|
|
|
|
|
|
|
. | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . |
Predicted Secondary structure |   |
 | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | D | G | I | L | A | L | P | A | I | S | A | T | V | W | M |
Query Conservation |   |
  | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|   |
|
|   |   |
|   |   |
|
|   |
Alig confidence |   |
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |
|
|
|
|   |
|
Template Sequence |   |
E | Y | G | G | S | S | Q | V | D | S | S | G | K | A | T | V | W | L | N | P | L | S | V | T | T | F | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| T | T | S |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
385 | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|