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Job DescriptionP21517
Confidence97.42%DateThu Jan 5 11:38:27 GMT 2012
Rank159Aligned Residues328
% Identity16%Templatec1ktbA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: the structure of alpha-n-acetylgalactosaminidase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GGDLDGISEKLPYL. . . . . KKLGVTALYL. . . . . NPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVL
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Template Sequence  CISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRDAEGRLVPDPERF. . . . . . . . . PRGIKALADYVHARGLKLGI
Template Known Secondary structure  SSSSST



SS
B
SS

TTS


B
TTT
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   32.......40.........50.........60.........70.........80.. .......90.........100..
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  DGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLK
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Template Sequence  YGDLGRL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TCGGYPGTTLDRVEQDAQTFA. . . . .
Template Known Secondary structure  BSSB...............................................
TTSSB
B
GGG.....
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Query Sequence  APWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLA
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Template Sequence  . EWGVDMLKLDGC. . . . . YSSGKEQAQGYPQMARALNATGRPIVYSCS. . . . . . . . . . . WPAYQGGLPPKVNYTLLGEIC
Template Known Secondary structure  .T


T.....T

TTS


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   131........140.. .......150.........160.........170.. .......180.........190...
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  NTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEV
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Template Sequence  NLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDMLIIGNFGLSYEQS. . RSQMALWTIMAAPLLMSTD. .
Template Known Secondary structure  S
S



SSTGGGTGGG
BTTB


B
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..TT


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   194.....200.........210.........220.........230.........240.........250 .........260.........
 
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Query Sequence  GLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQ. RVLVAINRGEACE
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Template Conservation  .................           
     
                      
       
   
   
      
Template Sequence  . . . . . . . . . . . . . . . . . LRTISPSAKKILQNRLMIQINQDPLGIQGRRIIKEGSHIEVFLRPLSQAASALVFFSRRTDMP
Template Known Secondary structure  .................TTT

T
T
TT




TTS
STT


SSS
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   565....570 .........580.........590.........600..
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Query Sequence  VVLPAS. . . . . . . . . . . . PFLNAVQWQCKEGHGQLTDGILALPAISATVW
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Template Sequence  FRYTTSLAKLGFPMGAAYEVQDVYSGKIISGLKTGDNFTVIINPSGVVMW
Template Known Secondary structure  T

TT
TTT

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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