 |
Job Description | P76114 | Confidence | 83.20% | Date | Thu Jan 5 12:19:06 GMT 2012 |
Rank | 228 | Aligned Residues | 48 |
% Identity | 15% | Template | c1u78A_ |
PDB info |
PDB header:dna binding protein/dna | Chain: A: PDB Molecule:transposable element tc3 transposase; |
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
|
Resolution | 2.69 Å |
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | H | V | S | L | T | L | Q | V | E | N | D | L | K | H | Q | L | S | I | G | A | L | K | P | G | A | R | L | I | T | K | N | L | A | E | Q | L | G | M | S | I | T | P | V | R | E | A | L | L | R | L | V | S | V | N |
Query Conservation |   |
  |   |   |
|
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |
|
|
|   |
|
|
|   |   |   |
|
|
|
|   |   |
|
|
|
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
| . | . | . | . | . | . | . |   |
|   |   |   |
|
|   |   |
|
|   |
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |
Template Sequence |   |
R | G | S | A | L | S | D | T | E | R | A | Q | L | D | V | M | K | L | L | N | . |
. |
. |
. |
. |
. |
. |
V | S | L | H | E | M | S | R | K | I | S | R | S | R | H | C | I | R | V | Y | L | K | D | P | V | S | Y | G |
Template Known Secondary structure |   |
| S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  | S | G | G | G | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|