Job Description P14294 Confidence 100.00% Date Thu Jan 5 11:33:58 GMT 2012 Rank 1 Aligned Residues 625 % Identity 99% Template c2o59B_ PDB info PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	L	F	I	A	E	K	P	S	L	A	R	A	I	A	D	V	L	P	K	P	H	R	K	G	D	G	F	I	E	C	G	N	G	Q	V	V	T	W	C	I	G	H	L	L	E	Q	A	Q	P	D	A	Y	D	S	R	Y	A	R	W	N	L	A	D	L	P	I	V	P	E	K	W	Q	L	Q	P	R	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	L	F	I	A	E	K	P	S	L	A	R	A	I	A	D	V	L	P	K	P	H	R	K	G	D	G	F	I	E	C	G	N	G	Q	V	V	T	W	C	I	G	H	L	L	E	Q	A	Q	P	D	A	Y	D	S	R	Y	A	R	W	N	L	A	D	L	P	I	V	P	E	K	W	Q	L	Q	P	R	P	S
Template Known Secondary structure								S	S									T	T	S		S						S	S					T	T	T								S		S						G	G	G	T		G	G	G	G	S			S	T	T		S				S	S							S	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	K	Q	L	N	V	I	K	R	F	L	H	E	A	S	E	I	V	H	A	G	D	P	D	R	E	G	Q	L	L	V	D	E	V	L	D	Y	L	Q	L	A	P	E	K	R	Q	Q	V	Q	R	C	L	I	N	D	L	N	P	Q	A	V	E	R	A	I	D	R	L	R	S	N	S	E	F	V	P	L	C	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	K	Q	L	N	V	I	K	R	F	L	H	E	A	S	E	I	V	H	A	G	D	P	D	R	E	G	Q	L	L	V	D	E	V	L	D	Y	L	Q	L	A	P	E	K	R	Q	Q	V	Q	R	C	L	I	N	D	L	N	P	Q	A	V	E	R	A	I	D	R	L	R	S	N	S	E	F	V	P	L	C	V
Template Known Secondary structure		T															S								S	S														T	T							T	T							S			S										S				G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	A	R	A	R	A	D	W	L	Y	G	I	N	M	T	R	A	Y	T	I	L	G	R	N	A	G	Y	Q	G	V	L	S	V	G	R	V	Q	T	P	V	L	G	L	V	V	R	R	D	E	E	I	E	N	F	V	A	K	D	F	F	E	V	K	A	H	I	V	T	P	A	D	E	R	F	T	A	I	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	L	A	R	A	R	A	D	W	L	Y	G	I	N	M	T	R	A	Y	T	I	L	G	R	N	A	G	Y	Q	G	V	L	S	V	G	R	V	Q	T	P	V	L	G	L	V	V	R	R	D	E	E	I	E	N	F	V	A	K	D	F	F	E	V	K	A	H	I	V	T	P	A	D	E	R	F	T	A	I	W
Template Known Secondary structure																												T	T			S						T	T																																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	S	E	A	C	E	P	Y	Q	D	E	E	G	R	L	L	H	R	P	L	A	E	H	V	V	N	R	I	S	G	Q	P	A	I	V	T	S	Y	N	D	K	R	E	S	E	S	A	P	L	P	F	S	L	S	A	L	Q	I	E	A	A	K	R	F	G	L	S	A	Q	N	V	L	D	I	C	Q	K	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	P	S	E	A	C	E	P	Y	Q	D	E	E	G	R	L	L	H	R	P	L	A	E	H	V	V	N	R	I	S	G	Q	P	A	I	V	T	S	Y	N	D	K	R	E	S	E	S	A	P	L	P	F	S	L	S	A	L	Q	I	E	A	A	K	R	F	G	L	S	A	Q	N	V	L	D	I	C	Q	K	L	Y
Template Known Secondary structure					G	G	G	G	G	G	B		T	T			B														T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	H	K	L	I	T	Y	P	R	S	D	C	R	Y	L	P	E	E	H	F	A	G	R	H	A	V	M	N	A	I	S	V	H	A	P	D	L	L	P	Q	P	V	V	D	P	D	I	R	N	R	C	W	D	D	K	K	V	D	A	H	H	A	I	I	P	T	A	R	S	S	A	I	N	L	T	E	N	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	H	K	L	I	T	Y	P	R	S	D	C	R	Y	L	P	E	E	H	F	A	G	R	H	A	V	M	N	A	I	S	V	H	A	P	D	L	L	P	Q	P	V	V	D	P	D	I	R	N	R	C	W	D	D	K	K	V	D	A	H	H	A	I	I	P	T	A	R	S	S	A	I	N	L	T	E	N	E	A
Template Known Secondary structure			T	S			B			S	S						B		G	G	G	G	G	G												S	T	T	T				T	T			T	T				T	T	B		G	G	G		S	S						B		S			S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	Y	N	L	I	A	R	Q	Y	L	M	Q	F	C	P	D	A	V	F	R	K	C	V	I	E	L	D	I	A	K	G	K	F	V	A	K	A	R	F	L	A	E	A	G	W	R	T	L	L	G	S	K	E	R	D	E	E	N	D	G	T	P	L	P	V	V	A	K	G	D	E	L	L	C	E	K	G	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	Y	N	L	I	A	R	Q	Y	L	M	Q	F	C	P	D	A	V	F	R	K	C	V	I	E	L	D	I	A	K	G	K	F	V	A	K	A	R	F	L	A	E	A	G	W	R	T	L	L	G	S	K	E	R	D	E	E	N	D	G	T	P	L	P	V	V	A	K	G	D	E	L	L	C	E	K	G	E	V
Template Known Secondary structure														T	T	S															T	T														G	G	G	G	G	S							T	T		B	S								T	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	Q	T	Q	P	P	R	H	F	T	D	A	T	L	L	S	A	M	T	G	I	A	R	F	V	Q	D	K	D	L	K	K	I	L	R	A	T	D	G	L	G	T	E	A	T	R	A	G	I	I	E	L	L	F	K	R	G	F	L	T	K	K	G	R	Y	I	H	S	T	D	A	G	K	A	L	F	H	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	R	Q	T	Q	P	P	R	H	F	T	D	A	T	L	L	S	A	M	T	G	I	A	R	F	V	Q	D	K	D	L	K	K	I	L	R	A	T	D	G	L	G	T	E	A	T	R	A	G	I	I	E	L	L	F	K	R	G	F	L	T	K	K	G	R	Y	I	H	S	T	D	A	G	K	A	L	F	H	S
Template Known Secondary structure																							T	G	G	G	G													T	T	S	S	S		T	T	T											T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	M	A	T	R	P	D	M	T	A	H	W	E	S	V	L	T	Q	I	S	E	K	Q	C	R	Y	Q	D	F	M	Q	P	L	V	G	T	L	Y	Q	L	I	D	Q	A	K	R	T	P	V	R	Q	F	R	G	I	V	A	P	G	S	G	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	E	M	A	T	R	P	D	M	T	A	H	W	E	S	V	L	T	Q	I	S	E	K	Q	C	R	Y	Q	D	F	M	Q	P	L	V	G	T	L	Y	Q	L	I	D	Q	A	K	R	T	P	V	R	Q	F	R	G	I	V	A	P	A	I	A	H	H
Template Known Secondary structure		S						S	S															T	T	S	S																						T			G	G	G	G	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.