 |
Job Description | P0AGJ9 | Confidence | 99.91% | Date | Thu Jan 5 11:29:21 GMT 2012 |
Rank | 39 | Aligned Residues | 98 |
% Identity | 41% | Template | d1jh3a_ |
SCOP info | Alpha-L RNA-binding motif
| Alpha-L RNA-binding motif
| Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
|
Resolution | UNK |
|
 |
  |   |
326 | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | L | F | S | G | S | L | S | A | L | S | E | A | D | F | E | Q | L | A | Q | D | G | V | P | M | V | E | M | E | K | G | A | D | L | M | Q | A | L | V | D | S | E | L | Q | P | S | R | G | Q | A | R | K | T | I | A | S | N | A | I | T | I | N | G | E | K | Q | S | D | P | E | Y | F | F | K | E | E | D | R | L | F |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |
Template Sequence |   |
A | L | F | S | G | D | I | A | N | L | T | A | A | E | I | E | Q | G | F | K | D | V | P | S | F | V | H | E | G | G | D | V | P | L | V | E | L | L | V | S | A | G | I | S | P | S | K | R | Q | A | R | E | D | I | Q | N | G | A | I | Y | V | N | G | E | R | L | Q | D | V | G | A | I | L | T | A | E | H | R | L | E |
Template Known Secondary structure |   |
|
|
|
| S | S | S | T | T | S |
|  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |  |  |  | T | S |
|
| S |  |  |  |  |  |  |  |  |  | S | T | T |  |  |  | T | T |  |  |
|
| S | T | T | T |
|
| S | S | T | T | T | S | S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
406 | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | F | T | L | L | R | R | G | K | K | N | Y | C | L | I | C | W |
Query Conservation |   |
  |   |   |   |
|
|
|   |
|
|
|   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|   |
|
|
|   |   |   |   |
|   |   |
Template Sequence |   |
G | R | F | T | V | I | R | R | G | K | K | K | Y | Y | L | I | R | Y |
Template Known Secondary structure |   |
S | S |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|