Job Description P0AGJ9 Confidence 98.66% Date Thu Jan 5 11:29:21 GMT 2012 Rank 44 Aligned Residues 205 % Identity 12% Template c3tqoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii. Resolution 2.30 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	.	.	.	.	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F
Query Conservation																							.	.	.	.
Alig confidence												.											.	.	.	.																			.	.
Template Conservation												.																																	.	.
Template Sequence		Y	V	C	G	X	T	V	Y	D	Y	.	X	H	I	G	H	G	R	S	W	I	I	F	D	X	V	V	R	Y	L	R	X	R	G	Y	E	V	T	F	V	R	N	I	.	.	T	D	I	D	D	K	I	I	K	R	A	G	E	N	K	E	S	P	A	A	L	A	E	R	F	I	Q	I	L	H	E	D	E	K	A
Template Known Secondary structure							B	T	T	S		.		B																				T	T									B	.	.	B													T	T	S
Template Predicted Secondary structure												.																																	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	.	.	.	.	.	.	.	.	.	.	.	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		L	R	V	L	S	P	D	.	.	.	.	Q	E	P	R	A	T	Q	Y	V	P	E	I	I	K	L	I	Q	K	L	L	D	N	Q	Y	A	Y	T	G	Q	N	G	D	V	F	F	D	V	R	R	F	K	D	Y	G	K	L	S	H	R	H	L	D	S	K	R	D	P	L	D	F	V	L	W	K	K	A	K	P	G
Template Known Secondary structure			T					S	.	.	.	.	B			B	G	G	G																T	S					T	T	S						T	T	T		T	T	T	T	T	T	T	T		S					S	S	T	T										T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
										169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																									.	.
Query SS confidence		.	.	.	.	.	.	.	.																																									.	.
Query Sequence		.	.	.	.	.	.	.	.	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	.	.	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K
Query Conservation		.	.	.	.	.	.	.	.																																									.	.
Alig confidence		.	.	.	.	.	.	.	.																						.																			.	.
Template Conservation																															.
Template Sequence		E	P	K	W	D	S	P	W	G	E	G	R	P	G	W	H	I	E	C	S	A	X	S	S	S	I	L	G	Q	.	P	F	D	I	H	G	G	G	L	D	L	K	F	P	H	H	E	N	E	I	A	Q	S	E	A	G	E	E	K	P	F	V	K	L	W	X	H	A	G	L	L	E	I	N	K	E	K	X	S	K
Template Known Secondary structure		S			B			T	T		S																			S	.	S								G	G	G	T	T	T														S	S															T	T					T
Template Predicted Secondary structure																															.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		239	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	G	G	A	V	W	L	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	G	N	I	I	S	I	R	E
Template Known Secondary structure		T	T	T				B
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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