Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 35 Aligned Residues 256 % Identity 14% Template c3sz3A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from vibrio cholerae2 with an endogenous tryptophan Resolution 1.50 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L
Query Conservation
Alig confidence															.																																						.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation															.																																						.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		K	P	I	V	L	S	G	V	Q	P	S	G	E	.	L	S	I	G	N	Y	L	G	A	L	R	Q	W	Q	Q	M	Q	D	D	Y	D	C	Q	Y	C	V	V	D	L	H	A	I	T	V	R	Q	D	.	.	.	.	.	.	.	.	.	.	P	Q	A	L	H	E	A	T	L	D	A	.	.	.	L	A	I	C	L
Template Known Secondary structure		S									S	S	S		.		B							T	G	G	G								S												T	T	S				.	.	.	.	.	.	.	.	.	.												.	.	.
Template Predicted Secondary structure															.																																						.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V
Query Conservation
Alig confidence																																																				.	.	.																									.	.	.
Template Conservation																																																				.	.	.																									.	.	.
Template Sequence		A	V	G	V	D	P	K	K	S	T	L	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	V	L	N	C	Y	T	Q	M	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	.	.	.	N	D	V	N	A	G	L	F	G	Y	P	V	L	M	A	A	D	I	L	L	Y	G	A	H	.	.	.
Template Known Secondary structure			T	T			T	T	T	S					G	G	G		T											T	T	S							T												G	.	.	.	G	G																		T	T	T		S	.	.	.
Template Predicted Secondary structure																																																				.	.	.																									.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.													.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.						.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.						.	.	.
Query Sequence		V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	.	.	K	F	G	K	T	.	.	.	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.																		.	.						.	.	.
Alig confidence		.																									.	.	.	.	.	.	.	.	.	.	.	.																		.	.						.	.	.								.	.	.
Template Conservation		.																																																																							.	.	.
Template Sequence		.	Q	V	P	V	G	S	D	Q	K	Q	H	L	E	L	A	R	D	I	A	T	R	F	N	N	I	Y	S	P	E	Q	P	I	F	T	I	P	E	P	Y	I	P	T	V	N	A	R	V	M	S	L	Q	D	A	T	K	K	M	S	K	S	D	D	N	R	K	N	V	I	T	L	.	.	.	L	E	D	P	K	S
Template Known Secondary structure		.						G	G	G																				S	S	S		S	S									S								T	T								T	T		S		G	G	G			B	T	.	.	.	T
Template Predicted Secondary structure		.																																																																							.	.	.
Template SS confidence
			143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.																.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Y	Q	F	W	I	N	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	K	K	I	N	K	A	Q	T	D	A	E	T	P	P	R	I	A	Y	D	V	E	N	K	A	G	I	A	N	L	M	G	L	Y	S	A	A	T	G	K	T	F	A	E	I	E	A	Q	Y	A	G	V	E	M	Y	G	P	F	K	K	D	V	G	E	A	V	V	A	M	L	E
Template Known Secondary structure								T							S	S							T	T	T																										T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions