Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 32 Aligned Residues 269 % Identity 15% Template c3n9iA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from yersinia pestis2 co92 Resolution 1.95 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L
Query Conservation
Alig confidence															.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	I	V	F	S	G	A	Q	P	S	G	E	.	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	Q	M	Q	D	D	Y	D	C	I	Y	C	I	V	D	L	H	A	I	T	A	R	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	L	R	K	R	T	L	D	T	L	A	L	Y	L
Template Known Secondary structure											S		S		.		B							T						T	T	T	T	T	S												T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.														.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V
Query Conservation
Alig confidence																																																				.	.	.																									.	.	.
Template Conservation																																																				.	.	.																									.	.	.
Template Sequence		A	C	G	I	D	P	K	K	S	T	I	F	V	Q	S	H	V	P	E	H	S	Q	L	S	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	.	.	.	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	.	.	.
Template Known Secondary structure				T			T	T	T	S					G	G	G		T											T	T	S							T											S	G	.	.	.	G	G																		T	T	T		S	.	.	.
Template Predicted Secondary structure																																																				.	.	.																									.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.										.	.	.	230	.	.	.			.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.								.	.							.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.								.	.							.	.	.
Query Sequence		V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	.	.	.	.	.	.	.	.	.	L	I	T	K	A	D	G	.	.	T	K	F	G	K	T	.	.	.	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q
Query Conservation																																				.	.	.	.	.	.	.	.	.								.	.							.	.	.
Alig confidence		.																																		.	.	.	.	.	.	.	.	.								.	.							.	.	.								.	.	.
Template Conservation		.																																																																				.	.	.
Template Sequence		.	Q	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R	D	I	A	S	R	F	N	N	L	Y	G	D	I	F	K	I	P	E	P	F	I	P	K	A	G	A	R	V	M	S	L	Q	D	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	E	L	.	.	.	L	E	D	P	K	S	V	V	K
Template Known Secondary structure		.						G	G	G																			S	S		S															B		S	S		T	T	S	B			T	T		S		G	G	G			B	T	.	.	.	T	S
Template Predicted Secondary structure		.																																																																				.	.	.
Template SS confidence
			155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230
		259	260	.	.	.																.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		F	W	I	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.
Template Sequence		K	I	K	R	A	M	T	D	S	D	E	P	A	L	I	R	Y	D	V	E	K	K	A	G	V	S	N	L	L	D	I	L	S	G	V	T	G	Q	S	I	P	E	L	E	A	Q	F	T	G	Q	M	Y	.	G	H	L	K	G	A	V	A	D	A	V	S	G	M	L	S	E	L	Q	E	R	Y	R	T	Y	R	E
Template Known Secondary structure					T							S	S							T	T	T																										T	T	T				.																											T
Template Predicted Secondary structure																																																						.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
											314	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	E	G	L	Q	A	A	K	R	I	T	E	C
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	A	L	L	Q	D	V	M	R	E	G	A	A	K	A	R	A	R	A	Q	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions