Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 14 Aligned Residues 293 % Identity 15% Template c3jxeB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp Resolution 3.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																									.																																	.
Query SS confidence																									.																																	.
Query Sequence		L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	.	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A
Query Conservation																									.																																	.
Alig confidence																									.													.																				.																					.	.	.
Template Conservation																																						.																																									.	.	.
Template Sequence		F	F	R	R	K	F	F	F	S	H	R	D	Y	D	L	I	L	K	D	Y	E	E	G	R	G	F	F	L	Y	T	G	R	G	P	S	G	.	P	M	H	I	G	H	I	I	P	F	F	A	T	K	W	L	Q	E	K	F	G	V	N	L	Y	I	Q	I	T	D	D	E	K	F	L	F	K	E	N	L	.	.	.
Template Known Secondary structure					T	T	S						S										T	T												S	S	.			B																																			S	S		.	.	.
Template Predicted Secondary structure																																						.																																									.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G
Query Conservation
Alig confidence		.	.	.	.	.													.	.	.																							.	.	.																										.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.													.	.	.																							.	.	.																										.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	T	F	D	D	T	K	R	W	A	Y	D	N	.	.	.	I	L	D	I	I	A	V	G	F	D	P	D	K	T	F	I	F	Q	N	S	E	F	.	.	.	T	K	I	Y	E	M	A	I	P	I	A	K	K	I	N	F	S	M	A	K	A	V	F	G	F	.	.	.	.	.	.	.	T	E	Q
Template Known Secondary structure		.	.	.	.	.													.	.	.						T	T				T	T	S						T	T	T	S	.	.	.	T													S												.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.													.	.	.																							.	.	.																										.	.	.	.	.	.	.
Template SS confidence
							125	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.		.	.
Predicted Secondary structure																																																																					.	.									.
Query SS confidence																																																																					.	.									.
Query Sequence		I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	.	.	K	F	G	K	T	E	G	G	.	A	V
Query Conservation																																																																					.	.									.
Alig confidence																								.	.					.																																							.	.									.
Template Conservation																								.	.					.
Template Sequence		S	K	I	G	M	I	F	F	P	A	I	Q	I	A	P	T	F	F	E	R	K	R	.	.	C	L	I	P	.	A	A	I	D	Q	D	P	Y	W	R	L	Q	R	D	F	A	E	S	L	G	Y	Y	K	T	A	A	L	H	S	K	F	V	P	S	L	T	S	L	S	G	K	M	S	A	S	K	P	E	T	A	I
Template Known Secondary structure		S													G	G	G	G	S	S	S	S		.	.					.			G	G	G											T	T	T	T	T	S														S	S		S	S	S				T	T	S	G	G	G
Template Predicted Secondary structure																								.	.					.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320
Predicted Secondary structure																				.																																				.															.	.
Query SS confidence																				.																																				.															.	.
Query Sequence		W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	.	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	.	.	H	G	E	E	G	L	Q	A	A
Query Conservation																				.																																				.															.	.
Alig confidence				.	.	.														.																																				.															.	.
Template Conservation				.	.	.
Template Sequence		Y	L	.	.	.	T	D	S	P	E	D	V	E	K	K	V	W	K	F	T	L	K	C	V	V	F	K	W	L	E	I	F	F	E	E	D	D	K	K	L	K	E	R	Y	Y	A	C	K	N	G	E	L	T	C	G	E	C	K	R	Y	L	I	S	K	I	Q	E	F	L	K	E	H	Q	R	R	R	K	K	A	E
Template Known Secondary structure		B	T	.	.	.	T												T	S													T	T																T	T	S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		264	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		321	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	I	T	E	C	L	F	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	V	E	K	F	K	Y	T	G
Template Known Secondary structure									T	T	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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