Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 24 Aligned Residues 270 % Identity 19% Template c3i05B_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from trypanosoma brucei Resolution 2.80 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																										.																																	.
Query SS confidence																										.																																	.
Query Sequence		Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	.	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A
Query Conservation																										.																																	.
Alig confidence																										.																																	.
Template Conservation
Template Sequence		H	F	L	R	R	G	I	F	F	S	H	R	D	L	N	L	L	L	D	V	Y	E	S	G	Q	P	F	Y	L	Y	T	G	R	G	P	S	S	E	S	M	H	M	G	H	L	I	P	F	M	F	T	K	W	L	Q	D	S	F	R	V	P	L	V	I	Q	M	T	D	D	E	K	F	Y	F	R	N	I	P	M	E
Template Known Secondary structure						T	T	S						S										T	T													S	S			B	G	G	G	S														T																S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																							.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																							.	.	.	.	.	.	.
Template Sequence		Q	V	E	.	.	.	.	.	.	.	.	.	.	.	.	A	M	T	T	E	N	I	K	D	I	I	A	M	G	F	D	P	E	L	T	F	I	F	R	D	F	D	Y	M	G	C	M	.	.	Y	R	T	V	A	K	I	E	R	A	F	T	A	S	Q	V	R	G	C	F	G	F	.	.	.	.	.	.	.	A	M
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.												T	T	T			T	T	S										T	T	T	S	.	.											S												.	.	.	.	.	.	.		T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																																	.	.																							.	.	.	.	.	.	.
Template SS confidence
		127	.	.													130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.
Query Sequence		G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	.	.	.	.	.	.	.	.	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K
Query Conservation																										.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	N	C	G	R	W	M	F	P	A	I	Q	A	A	P	S	F	S	A	A	F	P	H	I	F	P	P	S	M	G	N	V	F	C	L	I	P	Q	A	I	D	Q	D	P	Y	F	R	L	T	R	D	I	A	P	R	L	G	Y	L	K	P	A	V	I	H	S	K	F	F	P	G	L	S	A	V	L	L	T	D
Template Known Secondary structure		T	S													G	G	G	S	G	G	G		T	T	T	S		G	G	G											G	G	G										T					T																			B	T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q
Query Conservation
Alig confidence			.	.	.																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	.	.	.	E	K	M	V	K	D	K	I	N	K	P	I	Q	W	L	S	F	F	L	E	.	D	D	E	E	L	A	R	V	K	K	E	G	R	I	M	T	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	K	L	L	I	N	T	I	T	A	I	T	K	T	H	Q	E	K	R
Template Known Secondary structure			.	.	.																					.									T	T				S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		278				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		319	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		364	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions