Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 18 Aligned Residues 288 % Identity 10% Template c3hzrD_ PDB info PDB header:ligase Chain: D: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																									.																																	.
Query SS confidence																									.																																	.
Query Sequence		L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	.	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A
Query Conservation																									.																																	.
Alig confidence																									.														.																			.																				.	.	.	.
Template Conservation																																							.																																							.	.	.	.
Template Sequence		Y	L	S	R	G	V	F	L	A	E	K	S	L	D	K	F	L	D	D	V	E	A	K	K	P	T	F	I	F	I	Q	K	Y	P	Q	K	E	.	V	A	L	E	E	Y	I	T	L	E	F	A	R	Y	L	Q	D	A	F	N	I	Q	V	I	I	Q	I	L	D	D	I	K	V	L	N	R	E	A	.	.	.	.
Template Known Secondary structure					T	T	S					S	S										T	T													S	S	.		B	G	G	G																														T	T	S		.	.	.	.
Template Predicted Secondary structure																																							.																																							.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G
Query Conservation
Alig confidence		.	.	.	.	.													.	.	.																										.	.																								.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.													.	.	.																										.	.																								.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	T	I	N	E	A	S	K	M	S	N	D	L	.	.	.	M	K	Y	I	L	A	F	G	F	N	E	D	K	T	F	I	Y	T	D	Y	Q	Y	F	G	K	.	.	M	Y	R	T	I	S	L	V	E	K	A	T	A	Y	N	V	V	Q	P	F	F	N	F	.	.	.	.	.	.	.	E	Y	S
Template Known Secondary structure		.	.	.	.	.													.	.	.							T				G	G	G													.	.																		T	T	T	S			.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure		.	.	.	.	.													.	.	.																										.	.																								.	.	.	.	.	.	.
Template SS confidence
							128	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240
Predicted Secondary structure																									.	.	.	.	.																																												.	.
Query SS confidence																									.	.	.	.	.																																												.	.
Query Sequence		I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	.	.	.	.	.	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	.	.	T	K	F	G	K	T	E
Query Conservation																									.	.	.	.	.																																												.	.
Alig confidence																									.	.	.	.	.																																												.	.
Template Conservation
Template Sequence		D	N	I	G	K	L	A	S	P	S	I	M	T	A	S	M	F	S	Q	S	Y	S	H	F	F	S	S	P	A	R	C	L	V	L	D	S	I	K	N	V	Q	F	H	S	I	I	D	Q	I	A	T	T	L	N	F	I	Q	P	T	V	L	F	H	K	M	V	P	L	L	S	G	V	T	K	F	D	I	P	S	D
Template Known Secondary structure		S														T	T	S	G	G	G		T	T	T		S	S										G	G	G															T															T	T		T	T			S				T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		241	.	.	.	.	.																	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Query Sequence		G	G	A	V	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A	Q	Y	V	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																					.
Template Conservation																																																						.
Template Sequence		H	N	S	I	L	L	S	D	N	A	K	Q	V	E	R	K	I	N	K	L	A	F	S	G	G	R	N	T	T	E	E	H	K	K	L	G	G	Q	C	D	I	D	V	S	F	Q	L	L	N	I	F	S	.	S	D	N	A	Q	V	K	D	V	E	E	K	Y	S	K	G	E	L	L	S	G	E	L	K	K	I	V
Template Known Secondary structure		T	T	S		B	T	T													T	S						S	S						T	T				G	G	G												.	S														T	T		S
Template Predicted Secondary structure																																																						.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	S	M	K	D	F	I	V	A	Y	D	A	K	K	K	P
Template Known Secondary structure																	T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions