Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 16 Aligned Residues 292 % Identity 19% Template c3focB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia Resolution 2.09 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																									.																																	.
Query SS confidence																									.																																	.
Query Sequence		L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	.	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A
Query Conservation																									.																																	.
Alig confidence																									.																																	.																					.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		M	L	R	R	G	L	F	Y	A	H	R	D	F	E	E	F	L	S	Y	Y	E	K	G	H	P	I	Y	I	Y	T	G	R	G	P	S	S	G	A	L	H	L	G	H	L	L	P	F	I	F	T	K	Y	L	Q	D	A	F	K	C	Y	V	V	I	Q	I	T	D	D	E	K	F	L	R	N	R	S	L	.	.	.
Template Known Secondary structure					T	T	S						S										T	T													S	S			B																		T																	T	T		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G
Query Conservation
Alig confidence		.	.	.	.	.													.	.	.																																																			.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.													.	.	.																																																			.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	S	Y	A	E	V	D	S	Y	T	R	E	N	.	.	.	I	K	D	I	I	A	C	G	F	D	P	D	K	T	F	I	F	I	N	S	Q	Y	L	S	L	K	N	R	Y	R	F	S	C	L	V	D	R	M	L	P	I	S	Q	L	R	A	S	F	G	F	.	.	.	.	.	.	.	S	N	D
Template Known Secondary structure		.	.	.	.	.													.	.	.						T	T	T			G	G	G										T	T	S	T	T											T													.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure		.	.	.	.	.													.	.	.																																																			.	.	.	.	.	.	.
Template SS confidence
							122	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																																	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	V	G	Y	A	A	F	P	P	K	Q	M	L	P	V	Y	S	T	Y	F	D	G	L	P	F	T	R	V	P	L	P	V	G	A	V	L	S	P	V	H	V	V	E	E	L	F	P	D	S	K	R	Y	Q	K	A	M	C	L	I	A	S	G	I	E	Q	D	P	Y	F	R	L	A	R	D	L	A	P	R	M
Template Known Secondary structure								T							G	G	G	S	G	G	G	G	T	T	S	G	G	G		S	B																		G	G	G	T	T	B											T	T	T											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.												250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																				.	.										.								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.										.								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	.	.	T	K	F	G	K	T	E	G	G	.	A	V	W	L	D	P	K	.	.	.	.	.	.	.	.	.	.	.	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E
Query Conservation																				.	.										.								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.										.								.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																																														.
Template Sequence		G	H	P	K	N	A	Y	L	L	G	K	F	L	P	G	L	Q	G	S	G	T	K	M	S	A	S	D	P	N	S	A	I	Y	L	T	D	T	P	A	Q	I	K	N	K	I	N	R	Y	A	F	S	G	G	R	D	T	A	F	G	A	D	L	S	V	D	V	S	V	R	Y	L	E	V	F	M	K	.	D	D	A
Template Known Secondary structure		T	S														T	T		T	T					S	S		G	G	G	S		B	T	T														S				S									T	T	T													.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		E	L	E	K	L	K	A	D	Y	K	T	G	K	L	L	T	G	E	V	K	A	T	L	I	G	I	L	Q	G	L	I	K	E	H	A	E	R	R	D	K
Template Known Secondary structure													T	S	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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