Phyre 2 alignment of P0AGJ9 with c3a05A

Job Description P0AGJ9
Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012

Rank 25 Aligned Residues 286

% Identity 17% Template c3a05A_

PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E
Query Conservation																								.
Alig confidence																								.														.																																							.	.	.	.
Template Conservation																																						.																																							.	.	.	.
Template Sequence	L	M	R	R	G	I	I	F	G	H	R	D	F	D	K	I	L	E	A	K	A	R	G	E	R	V	A	V	L	T	G	F	M	P	S	G	K	.	F	H	F	G	H	K	L	T	V	D	Q	L	I	Y	L	Q	K	N	G	F	K	V	F	V	A	I	A	D	A	E	A	F	A	V	R	R	I	G	.	.	.	.
Template Known Secondary structure				T	T	S						S										T	T													S		.		B																T	T															T	T				.	.	.	.
Template Predicted Secondary structure																																						.																																							.	.	.	.
Template SS confidence
	46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I
Query Conservation
Alig confidence	.	.	.	.													.	.	.																										.	.																						.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.													.	.	.																										.	.																						.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	R	E	E	A	V	R	I	A	V	E	E	Y	.	.	.	I	A	N	M	I	A	L	G	L	D	P	K	D	T	E	F	Y	F	Q	T	N	R	G	T	P	.	.	Y	F	R	L	I	Q	L	F	S	G	K	V	T	A	A	E	M	E	A	I	Y	.	.	.	.	.	.	.	.	.	.	G	E	L
Template Known Secondary structure	.	.	.	.											T	T	.	.	.								T			T	T	T						G	G	G	S				.	.									T	T	S	S										.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure	.	.	.	.													.	.	.																										.	.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
					121	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180	.

	169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																						.	.	.	.																														.	.	.	.
Query SS confidence																						.	.	.	.																														.	.	.	.
Query Sequence	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	.	.	.	.	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	.	.	.	.	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T	E
Query Conservation																						.	.	.	.																														.	.	.	.
Alig confidence																						.	.	.	.																														.	.	.	.
Template Conservation
Template Sequence	T	P	A	K	M	M	A	S	L	T	Q	A	A	D	I	L	H	V	Q	L	D	E	Y	G	G	Y	R	H	V	V	V	P	V	G	A	D	Q	D	P	H	L	R	L	T	R	D	L	A	D	R	M	A	G	V	V	E	L	E	R	P	A	S	T	Y	H	K	L	Q	P	G	L	D	G	R	K	M	S	S	S	R
Template Known Secondary structure																	G	G	G	S	G	G	G	T											G	G	G														T	T	T	T	S														B		T	T	S	S	B			T	T	S
Template Predicted Secondary structure
Template SS confidence
	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	241	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300
Predicted Secondary structure			.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence			.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence	G	G	.	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A	Q
Query Conservation			.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence			.					.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation								.	.	.
Template Sequence	P	D	S	T	I	F	L	.	.	.	T	D	P	P	E	V	A	R	N	K	L	F	R	A	L	T	G	G	R	A	T	A	E	E	Q	R	R	L	G	G	V	P	E	V	C	S	V	Y	H	M	D	L	Y	H	L	M	P	D	D	G	E	V	K	H	I	Y	T	S	C	R	L	G	K	I	L	C	G	E	C	K
Template Known Secondary structure	G	G	G	S		B	T	.	.	.	T												T				S			S	S											G	G	G										T	T			S														T
Template Predicted Secondary structure								.	.	.
Template SS confidence
	262	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	I	A	W	E	K	L	E	R	F	L	A	E	H	Q	S	R	L	E	K	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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