Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 38 Aligned Residues 262 % Identity 16% Template c2yy5C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from mycoplasma2 pneumoniae Resolution 2.55 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F
Query Conservation
Alig confidence													.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	L	T	G	I	Q	A	S	G	K	.	Q	H	L	G	N	Y	L	G	V	M	Q	S	L	I	E	L	Q	E	Q	C	Q	L	F	V	F	V	A	D	L	H	S	I	T	V	D	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	A	L	K	Q	N	N	F	D	L	V	R	T	L	L	A	V
Template Known Secondary structure											T	T	.		B							T	T	T	T								S												T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.																		T
Template Predicted Secondary structure													.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.														.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L
Query Conservation
Alig confidence																											.	.	.																					.	.	.																									.	.	.	.
Template Conservation																											.	.	.																					.	.	.																									.	.	.	.
Template Sequence		G	L	D	P	Q	K	A	C	L	F	L	Q	S	D	L	L	E	H	S	M	M	G	Y	L	M	.	.	.	M	V	Q	S	N	L	G	E	L	Q	R	M	T	Q	F	K	A	K	K	A	.	.	.	L	N	I	P	T	G	L	L	T	Y	P	A	L	M	A	G	D	I	L	L	Y	Q	P	D	.	.	.	.	I
Template Known Secondary structure		T			T	T	T						G	G	G		T										.	.	.			T	S													G	G	G		.	.	.					T															T	T			S	.	.	.	.
Template Predicted Secondary structure																											.	.	.																					.	.	.																									.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.											.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.									.									.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.									.									.	.	.
Query Sequence		Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	.	.	.	.	.	.	.	.	.	.	L	I	T	K	A	D	G	T	.	K	F	G	K	T	E	G	G	.	.	.	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W
Query Conservation																																		.	.	.	.	.	.	.	.	.	.									.									.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.									.									.	.	.					.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		V	P	V	G	N	D	Q	K	Q	H	L	E	L	T	R	D	L	A	Q	R	I	Q	K	K	F	K	L	K	L	R	L	P	Q	F	V	Q	N	K	D	T	N	R	I	M	D	L	F	D	P	T	K	K	M	S	K	S	S	K	N	Q	N	G	V	I	Y	L	.	.	.	D	D	P	K	E	V	V	V	K	K	I
Template Known Secondary structure						G	G	G																															T	T	T	T	T		B		S	S		T	T	S	B			T	T		S		G	G	G			B	T	.	.	.	T
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.
		261	.	.				.														.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure					.	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence					.	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		I	N	T	.	.	.	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	.	.	.	.	.	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	.	.	.	.	.	.	.
Query Conservation					.	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence					.	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	A	T	T	D	S	F	N	K	I	R	F	A	S	K	T	Q	P	G	V	T	N	M	L	T	I	L	K	A	L	L	K	E	P	V	N	Q	S	L	T	N	Q	L	G	N	D	L	E	A	Y	F	S	T	K	S	Y	L	D	L	K	N	A	L	T	E	A	T	V	N	L	L	V	N	I	Q	R	K	R	E
Template Known Secondary structure								S	S				S			T	T	T															T	T	S	G	G	G									S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
				313	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	E	E	G	L	Q	A	A	K	R	I
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		Q	I	S	R	E	Q	V	F	N	C	L	Q	A
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions