Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 3 Aligned Residues 325 % Identity 36% Template c2rkjM_ PDB info PDB header:ligase/rna Chain: M: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: cocrystal structure of a tyrosyl-trna synthetase splicing2 factor with a group i intron rna Resolution 4.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	S	S	N	L	I	K	Q	L	Q	E	R	G	L	V	A	Q	V	T	D	.	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		K	K	Q	N	T	W	D	L	F	E	E	R	G	Y	V	K	D	T	A	G	T	K	E	H	I	A	E	L	M	R	T	R	R	I	G	A	Y	V	G	I	D	P	T	A	P	S	L	H	V	G	H	L	L	P	L	M	P	L	F	W	M	Y	L	E	G	Y	K	A	F	T	L	I	G	G	S	T	A	K	I	G
Template Known Secondary structure		S	S									T	T	T			S				S												S										T	T	S	S	S		B	G	G	G														T									T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	T	G	D	A	T	M	N	M	T	K	I	H	Y	Q	L	K	K	L	W	E	N	V	D	T	Q	M	R	A	R	G	Y	E	A	D	W	A	R	K	R	G	I	V	N	N	N	H	W	W	N	K	Q	P	M	L	E	V	L	R	R	V	G	H	A	L	R	I	G	P	M	L	S	R	D	T	V	K	N	K
Template Known Secondary structure																																T	T					S	S		B						T					T	T										T	T	T	T			S					T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																		.	.	.	.	220	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	N	Q	V	F	G	L
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		M	T	Q	.	G	D	G	V	S	F	A	E	F	T	Y	P	I	M	Q	G	W	D	W	F	E	L	F	Y	Q	Q	G	V	Q	M	Q	I	G	G	S	D	Q	Y	G	N	I	I	S	G	L	E	V	V	K	A	A	R	E	S	E	P	D	P	Q	E	R	K	Y	V	T	P	K	T	A	L	D	E	C	V	G	F
Template Known Secondary structure				T	.	S	S																																	G	G	G																	T											S			S	T	T
Template Predicted Secondary structure					.
Template SS confidence
		234	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	P	L	L	T	D	S	S	G	A	K	F	G	K	S	A	G	N	A	I	W	L	D	P	Y	Q	T	S	V	F	D	F	Y	G	Y	F	V	R	R	S	D	Q	E	V	E	N	L	L	K	L	F	T	F	M	P	I	S	E	I	T	K	T	M	E	E	H	I	K	D	P	S	K	R	V	A	Q	H	T	L
Template Known Secondary structure							B		S	S	S	S	B	T	T			T	T				B	S		G	G	G	S												S																												T	T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K	R	I	T	E	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	E	V	V	T	L	V	H	G	K	Q	E	A	S	A	A	E	D	Q	H	R	M	M
Template Known Secondary structure																							T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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