Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 4 Aligned Residues 308 % Identity 43% Template c2pidB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of human mitochondrial tyrosyl-trna synthetase in2 complex with an adenylate analog Resolution 2.20 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.									.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.
Query Sequence		L	I	K	Q	L	Q	E	R	G	L	V	A	Q	V	T	D	.	.	.	.	.	.	.	.	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G
Query Conservation																		.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	A	A	Q	K	A	R	G	L	F	K	D	F	F	P	E	T	G	T	K	I	E	L	P	E	L	F	D	R	G	T	A	S	F	P	Q	T	I	Y	C	G	F	D	P	T	A	D	S	L	H	V	G	H	L	L	A	L	L	G	L	F	H	L	Q	R	A	G	H	N	V	I	A	L	V	G	G	A	T	A
Template Known Secondary structure										T	S								S	S	S	S	S								S	S	S	S			S										S	S	S	S		B																T	T									T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.								.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																					.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.
Query Sequence		L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	.	.	.	.	.	.	.	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q
Query Conservation																																					.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	G	D	P	S	G	R	T	K	E	R	E	A	L	E	T	E	R	V	R	A	N	A	R	A	L	R	L	G	L	E	A	L	A	A	N	H	Q	Q	L	F	T	D	G	R	S	W	G	S	F	T	V	L	D	N	S	A	W	Y	Q	K	Q	H	L	V	D	F	L	A	A	V	G	G	H	F	R	M	G	T
Template Known Secondary structure		G	T				T	T		S	S																																			S	S										T					T	T											T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K
Query Conservation
Alig confidence														.																																																																			.
Template Conservation														.																																																																			.
Template Sequence		L	L	S	R	Q	S	V	Q	L	R	L	K	.	S	P	E	G	M	S	L	A	E	F	F	Y	Q	V	L	Q	A	Y	D	F	Y	Y	L	F	Q	R	Y	G	C	R	V	Q	L	G	G	S	D	Q	L	G	N	I	M	S	G	Y	E	F	I	N	K	L	T	G	E	D	V	F	G	I	T	V	P	L	I	T	.
Template Known Secondary structure														.	S	T	T																																	G	G	G																													.
Template Predicted Secondary structure														.																																																																			.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	G	T	K	F	G	K	T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	V	W	L	N	R	D	K	T	S	P	F	E	L	Y	Q	F	F	V	R	Q	P	D	D	S	V	E	R	Y	L	K	L	F	T	F	L	P	L	P	E	I	D	H	I	M	Q	L	H	V	K	E	P	E	R	R	G	P	Q	K	R	L	A	A	E	V	T	K	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.			B	S	S	T	T	T	S											T																																G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	G	E	E	G	L	Q	A	A	K	R	I	T	E	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	G	R	E	G	L	D	S	A	K	R	C	T	Q	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions