Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 1 Aligned Residues 402 % Identity 47% Template c2janD_ PDB info PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state Resolution 2.9 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	K	Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	D	E	L	S	W	R	G	L	I	A	Q	S	T	D	L	D	T	L	A	A	E	A	Q	R	G	P	M	T	V	Y	A	G	F	D	P	T	A	P	S	L	H	A	G	H	L	V	P	L	L	T	L	R	R	F	Q	R	A	G	H	R	P	I	V	L	A	G	G	A	T	G	M	I	G	D	T	V	A	E
Template Known Secondary structure									T	T			S			S												S										T	T	S	S	S		B	G	G	G													T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template Sequence		W	T	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	G	Q	L	E	R	F	V	D	F	D	D	S	P	M	G	A	I	V	E	N	N	L	E	W	T	G	S	L	S	A	I	E	F	L	R	D	I	G	K	H	F	S	V	N	V	M	L	A	R	D	T	I	R	R	R	L	A	.	.	G
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.									S				S	S	T	T							T					T	T										T	G	G	G								S	S									.	.	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template SS confidence
		98	.	100	.															.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T	.	E	G	G	A	V
Query Conservation																																																																												.
Alig confidence																																																																												.
Template Conservation
Template Sequence		E	G	I	S	Y	T	E	F	S	Y	L	L	L	Q	A	N	D	Y	V	E	L	H	R	R	H	G	C	T	L	Q	I	G	G	A	D	Q	W	G	N	I	I	A	G	V	R	L	V	R	Q	K	L	G	A	T	V	H	A	L	T	V	P	L	V	T	A	A	D	G	T	K	F	G	K	S	T	G	G	G	S	L
Template Known Secondary structure		T																																	G	G	G																												B		T	T	S		B	T	T	B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K	R	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	D	P	Q	M	T	S	P	Y	A	W	Y	Q	Y	F	V	N	T	A	D	A	D	V	I	R	Y	L	R	W	F	T	F	L	S	A	D	E	L	A	E	L	E	Q	A	T	A	Q	R	P	Q	Q	R	A	A	Q	R	R	L	A	S	E	L	T	V	L	V	H	G	E	A	A	T	A	A	V	E	H	A	S
Template Known Secondary structure		B	S	S	T	T	T	S											T			T	T	T									S																		G	G	G
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		325	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure							.																						.
Query SS confidence							.																						.
Query Sequence		E	C	L	F	S	.	G	S	L	S	A	L	S	E	A	D	F	E	Q	L	A	Q	D	G	V	P	M	.	V	E	M	E	K	G	A	D	L	M	Q	A	L	V	D	S	E	L	Q	P	S	R	G	Q	A	R	K	T	I	A	S	N	A	I	T	I	N	G	E	K	Q	S	D	P	E	Y	F	F	K	E	E	D
Query Conservation							.																						.
Alig confidence							.																						.
Template Conservation
Template Sequence		R	A	L	F	G	R	G	E	L	A	R	L	D	E	A	T	L	A	A	A	L	R	E	T	T	V	A	E	L	K	P	G	S	P	D	G	I	V	D	L	L	V	A	S	G	L	S	A	S	K	G	A	A	R	R	T	I	H	E	G	G	V	S	V	N	N	I	R	V	D	N	E	E	W	V	P	Q	S	S	D
Template Known Secondary structure				T	T	T	S	S		G	G	G	S												S							S	S	S			S								T	T	S		S	S										T	T					T	T						T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	F	G	R	F	T	L	L	R	R	G	K	K	N	Y	C	L	I	C	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	H	G	R	W	L	V	L	R	R	G	K	R	S	I	A	G	V	E	R
Template Known Secondary structure		S	B	T	T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.