Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 33 Aligned Residues 265 % Identity 15% Template c2j5bA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Resolution 2.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																						.																				.
Query SS confidence																						.																				.
Query Sequence		R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	.	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K
Query Conservation																						.																				.
Alig confidence																						.														.						.																																			.	.	.	.	.
Template Conservation																																				.																																									.	.	.	.	.
Template Sequence		L	S	I	A	E	E	C	E	T	L	D	R	L	K	Q	L	V	D	S	G	R	I	F	T	A	Y	N	G	F	E	P	S	G	R	.	I	H	I	A	Q	A	L	I	T	V	M	N	T	N	N	M	I	E	C	G	G	Q	M	I	I	Y	I	A	D	W	F	A	K	M	N	L	K	M	N	G	.	.	.	.	.
Template Known Secondary structure			T	T		S			S												T													S	S	.		B																	T	T															T	T	G	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																																				.																																									.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	.	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S
Query Conservation																																										.
Alig confidence		.	.													.	.	.																								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.													.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	D	I	N	K	I	R	E	L	G	R	Y	F	.	.	.	I	E	V	F	K	A	C	G	I	N	L	D	G	T	R	F	I	W	A	S	E	F	I	A	S	N	P	S	Y	I	E	R	M	L	D	I	A	E	F	S	T	I	S	R	V	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.													.	.	.							T	T			G	G	G																																	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.													.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				83	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.		.	.	.	.
Predicted Secondary structure																																																																		.	.										.
Query SS confidence																																																																		.	.										.
Query Sequence		F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	.	.	T	K	F	G	K	T	E	G	G	.	A	V	W	L
Query Conservation																																																																		.	.										.
Alig confidence		.	.	.																	.																																													.	.										.
Template Conservation		.	.	.																	.
Template Sequence		.	.	.	I	F	Y	P	C	M	Q	A	A	D	V	F	E	L	V	P	.	E	G	I	D	I	C	Q	L	G	I	D	Q	R	K	V	N	M	L	A	I	E	Y	A	N	D	R	G	L	K	I	P	I	S	L	S	H	H	M	L	M	S	L	S	G	P	K	K	K	M	S	K	S	D	P	Q	G	A	I	F	M
Template Known Secondary structure		.	.	.														S	S	T	.	T			S					B	G	G	G														T	T									B						T	T		S	S				S	T	T		G	G	G	S		B	T
Template Predicted Secondary structure		.	.	.																	.
Template SS confidence
					159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280											.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																		.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	.	.	.	.	.	.	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	.	.	.	.	.	.	.	.	.	.	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L
Query Conservation																		.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.														.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.											.
Template Conservation		.	.	.																																																										.
Template Sequence		.	.	.	D	D	T	E	Q	E	V	S	E	K	I	S	R	A	Y	C	T	D	E	T	F	D	N	P	I	F	E	Y	I	K	Y	L	L	L	R	W	F	G	T	L	N	L	C	G	K	I	Y	T	D	I	E	S	I	Q	E	D	F	.	S	S	M	N	K	R	E	L	K	T	D	V	A	N	Y	I	N	T	I
Template Known Secondary structure		.	.	.	T													S				S	S	S	T	T										T						S					T	T				S	S									.	T	T	S
Template Predicted Secondary structure		.	.	.																																																										.
Template SS confidence
					235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		311	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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