Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 30 Aligned Residues 284 % Identity 15% Template c2ip1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase Resolution 1.80 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																										.																																	.
Query SS confidence																										.																																	.
Query Sequence		Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	.	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A
Query Conservation																										.																																	.
Alig confidence																										.																																	.																.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		H	F	L	R	K	G	L	F	F	S	E	R	D	F	T	K	I	L	D	L	Y	E	Q	G	K	P	F	F	L	Y	T	G	R	G	P	S	S	D	S	M	H	L	G	H	M	I	P	F	V	F	T	K	W	L	Q	E	V	F	D	V	P	L	V	I	E	L	T	D	D	E	K	F	L	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	S						S											T													S	S			B	G	G	G															T															.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q
Query Conservation
Alig confidence		.																		.	.	.																													.																						.	.	.	.	.	.	.
Template Conservation		.																		.	.	.																													.																						.	.	.	.	.	.	.
Template Sequence		.	F	K	H	K	L	T	I	N	D	V	K	N	F	A	R	E	N	.	.	.	A	K	D	I	I	A	V	G	F	D	P	K	N	T	F	I	F	S	D	L	Q	Y	M	G	G	A	F	Y	.	E	T	V	V	R	V	S	R	Q	I	T	G	S	T	A	K	A	V	F	G	F	.	.	.	.	.	.	.	N	D
Template Known Secondary structure		.			T	T														.	.	.						T	T	T			G	G	G											S					.								T	S									T	T			.	.	.	.	.	.	.		T
Template Predicted Secondary structure		.																		.	.	.																													.																						.	.	.	.	.	.	.
Template SS confidence
			203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	.	.	.	.	.	.	.	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T
Query Conservation																										.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																																																	.
Template Conservation																																																																																	.
Template Sequence		S	D	C	I	G	K	F	H	F	A	S	I	Q	I	A	T	A	F	P	S	S	F	P	N	V	L	G	L	P	D	K	T	P	C	L	I	P	C	A	I	D	Q	D	P	Y	F	R	V	C	R	D	V	A	D	K	L	K	Y	S	K	P	A	L	L	H	S	R	F	F	P	A	L	Q	G	D	D	T	T	A	.
Template Known Secondary structure		T	S							T							T	T	S	G	G	G		T	T	T	T				T	T									G	G	G															T	S														T	T			G	G	G		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence		.	.	.	.				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																				.
Template Conservation		.	.	.	.				.	.	.																																																.
Template Sequence		.	.	.	.	I	F	M	.	.	.	T	D	T	P	K	Q	I	Q	K	K	I	N	K	Y	A	F	S	G	G	Q	V	S	A	D	L	H	R	E	L	G	G	N	P	D	V	D	V	A	Y	Q	Y	L	S	F	F	K	D	.	D	D	V	F	L	K	E	C	Y	D	K	Y	K	S	G	E	L	L	S	G	E	M
Template Known Secondary structure		.	.	.	.		B	T	.	.	.	T														S				S		S	S											T	T	T													.															T	S	S
Template Predicted Secondary structure		.	.	.	.				.	.	.																																																.
Template SS confidence
						358	.	360				.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	L	C	I	E	T	L	Q	E	F	V	K	A	F	Q	E	R	R	A	Q
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions