Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 17 Aligned Residues 303 % Identity 13% Template c2el7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus Resolution 2.50 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	.	.	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L
Query Conservation																									.	.
Alig confidence													.												.	.																												.	.	.	.	.	.	.	.													.	.	.
Template Conservation													.																																									.	.	.	.	.	.	.	.													.	.	.
Template Sequence		R	V	L	S	G	I	Q	P	S	G	E	.	I	H	I	G	N	Y	L	G	A	I	K	Q	W	V	A	I	G	E	K	L	G	R	D	A	F	F	C	I	V	D	Y	H	A	L	T	N	P	L	A	Y	.	.	.	.	.	.	.	.	D	P	S	T	L	A	Q	R	T	F	E	A	.	.	.	A	L	V	N	I
Template Known Secondary structure									S		S		.		B						T													G	G	G							G	G	G	G	G	G	S	T	T	T	S	.	.	.	.	.	.	.	.													.	.	.
Template Predicted Secondary structure													.																																									.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.									.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V
Query Conservation
Alig confidence																												.	.	.																						.																											.	.	.
Template Conservation																												.	.	.																						.																											.	.	.
Template Sequence		A	A	G	L	D	P	E	K	V	T	L	F	V	Q	S	H	V	P	E	H	T	E	L	S	W	V	.	.	.	F	T	T	L	T	P	L	G	D	L	T	R	M	T	Q	F	K	D	K	A	S	.	K	Q	E	T	V	W	S	G	L	L	M	Y	P	V	L	Q	A	A	D	I	L	I	Y	K	A	D	.	.	.
Template Known Secondary structure				T			T	T	T	S					G	G	G	S	T									.	.	.				T	S							T	S							T	T	.	S	S	S																				T	T			.	.	.
Template Predicted Secondary structure																												.	.	.																						.																											.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.										.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.																		.
Query SS confidence																											.	.	.	.	.	.	.	.	.																		.
Query Sequence		V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	.	.	.	.	.	.	.	.	.	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	.	K	F	G	K	T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N
Query Conservation																											.	.	.	.	.	.	.	.	.																		.
Alig confidence		.																									.	.	.	.	.	.	.	.	.																		.													.	.	.
Template Conservation		.																																																																.	.	.
Template Sequence		.	T	V	P	V	G	E	D	Q	V	Q	H	I	E	L	T	R	E	I	A	R	R	F	N	H	L	F	G	E	T	F	P	E	P	Q	A	L	L	N	P	E	A	P	R	V	P	G	I	D	G	K	A	K	M	S	K	S	L	G	N	T	I	G	L	.	.	.	L	E	P	E	E	S	I	W	Q	K	I	Q	H
Template Known Secondary structure		.						G	G	G																			S	S											T	T	S				B		T	T	S	S	S	B			T	T	T	T				B	S	.	.	.	S	S											T
Template Predicted Secondary structure		.																																																																.	.	.
Template SS confidence
			144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	.	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K	R	I	T	E	C	L	F	S	G	S	L	S	A	L	S	E	A	D	F	E
Query Conservation																																						.
Alig confidence																																						.															.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	D	D	P	T	I	L	F	T	Y	L	S	Y	F	A	P	K	D	L	V	E	A	L	K	E	E	Y	R	K	A	G	V	G	T	Y	V	V	K	R	I	L	F	D	H	L	M	E	A	L	R	.	P	I	R	E	R	A	E	A	L	K	K	.	.	.	.	.	.	.	.	.	.	.	D	P	D	Y	V	M
Template Known Secondary structure																	S														T	T		S																			.												.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.												.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	Q	D	G	V	P	M	V	E	M	E	K	G	A	D	L	M	Q	A	L	V	D	S	E	L	Q	P	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	L	L	E	G	A	K	R	A	R	A	V	A	Q	A	T	M	E	E	V	R	E	K	V	G	L	L	L	P	R
Template Known Secondary structure																										T	T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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