Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 28 Aligned Residues 308 % Identity 16% Template c2dlcX_ PDB info PDB header:ligase/trna Chain: X: PDB Molecule:tyrosyl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of the ternary complex of yeast tyrosyl-trna2 synthetase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A
Query Conservation																										.	.
Alig confidence								.																		.	.														.																																							.	.
Template Conservation								.																																	.																																							.	.
Template Sequence		G	L	I	T	K	N	.	L	Q	E	V	L	N	P	Q	I	I	K	D	V	L	E	V	Q	K	R	H	L	K	L	Y	W	G	T	A	P	T	G	R	.	P	H	C	G	Y	F	V	P	M	T	K	L	A	D	F	L	K	A	G	C	E	V	T	V	L	L	A	D	L	H	A	F	L	D	N	M	K	A	.	.
Template Known Secondary structure						T	T	.		S														T	S		S												S		.		B	G	G	G													T	T															T	T	T	S	S	.	.
Template Predicted Secondary structure								.																																	.																																							.	.
Template SS confidence
		14	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	.	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D
Query Conservation																										.
Alig confidence		.	.	.	.	.	.																			.																																																					.	.	.
Template Conservation		.	.	.	.	.	.																																																																								.	.	.
Template Sequence		.	.	.	.	.	.	P	L	E	V	V	N	Y	R	A	K	Y	Y	E	L	T	I	K	A	I	L	R	S	I	N	V	P	I	E	K	L	K	F	V	V	G	S	S	Y	Q	L	T	P	D	Y	T	M	D	I	F	R	L	S	N	I	V	S	Q	N	D	A	K	R	A	G	A	D	V	V	K	Q	V	.	.	.
Template Known Secondary structure		.	.	.	.	.	.		T	T																				T	T				T	T						T					T	S												T	T	S									T	T	T	T	S				.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																																																								.	.	.
Template SS confidence
								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.
Template Sequence		A	N	P	L	L	S	G	L	I	Y	P	L	M	Q	A	L	D	E	Q	F	L	D	V	D	.	.	.	.	C	Q	F	G	G	V	D	Q	R	K	I	F	V	L	A	E	E	N	L	P	S	L	G	Y	K	K	R	A	H	L	M	N	P	M	V	P	G	L	A	N	S	K	I	D	L	L	E	E	P	K	Q	V
Template Known Secondary structure		S	S			T																T	T		S	.	.	.	.						G	G	G											G	G	G	G	T																			S		B	T	T
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
			234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.									250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.
Predicted Secondary structure		.																	.	.	.	.	.	.	.	.																																														.
Query SS confidence		.																	.	.	.	.	.	.	.	.																																														.
Query Sequence		.	T	K	F	G	K	T	E	G	G	A	V	W	L	D	P	K	.	.	.	.	.	.	.	.	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	.	K	A	P	R	A	Q	Y	V	L
Query Conservation		.																	.	.	.	.	.	.	.	.																																														.
Alig confidence		.																	.	.	.	.	.	.	.	.																																														.
Template Conservation
Template Sequence		K	K	K	I	N	S	A	F	C	S	P	G	N	V	E	E	N	G	L	L	S	F	V	Q	Y	V	I	A	P	I	Q	E	L	K	F	G	T	N	H	F	E	F	F	I	D	R	P	E	K	F	G	G	P	I	T	Y	K	S	F	E	E	M	K	L	A	F	K	E	E	K	L	S	P	P	D	L	K	I	G	V
Template Known Secondary structure								S				T	T			S	S										T							T	S	S	S	T	T										G	G	G	S						S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K	R	I	T	E	C	L	F	S	G	S	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	A	I	N	E	L	L	E	P	I	R	Q	E	F	A	N	N	K	E	F	Q	E	A	S	E	K	G	Y	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions