Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 15 Aligned Residues 295 % Identity 18% Template c2cycB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		M	A	S	S	N	L	I	K	Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	.	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I
Query Conservation																																																					.
Alig confidence																																														.							.
Template Conservation																																														.
Template Sequence		M	D	I	E	E	R	I	N	L	V	L	K	K	P	T	E	E	V	L	T	V	E	N	L	R	H	L	F	E	I	G	A	P	L	Q	H	Y	I	G	F	E	I	S	G	.	Y	I	H	L	G	T	G	L	M	A	G	A	K	I	A	D	F	Q	K	A	G	I	K	T	R	V	F	L	A	D	W	H	S	W	I
Template Known Secondary structure													S	T	T						T										T	T				B									S	.			B																	T	T		B
Template Predicted Secondary structure																																														.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	.	.	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V
Query Conservation																									.	.
Alig confidence								.	.	.	.	.	.	.											.	.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		N	D	K	L	G	G	.	.	.	.	.	.	.	D	L	E	V	I	Q	E	V	A	L	K	Y	F	K	V	G	M	E	K	S	I	E	V	M	G	G	D	P	K	K	V	E	F	V	L	A	S	E	I	L	E	K	G	D	Y	W	Q	T	V	I	D	I	S	K	N	V	T	L	S	R	V	M	R	S	I	T	I
Template Known Secondary structure		T	T	G	G	G	G	.	.	.	.	.	.	.												T												T	T			G	G	G	S					T					T													T	T	S							T	T	G	G	G
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	.	.	.	.	.	.	.	.	.	Q	V	F	G	L	T	V	P	L	I
Query Conservation																																																															.	.	.	.	.	.	.	.	.
Alig confidence					.	.																												.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation					.	.																												.	.	.	.
Template Sequence		M	G	R	.	.	Q	M	G	E	A	I	D	F	A	K	L	I	Y	P	M	M	Q	V	A	D	I	F	Y	Q	G	V	T	.	.	.	.	I	A	H	A	G	M	D	Q	R	K	A	H	V	I	A	I	E	V	A	Q	K	L	R	Y	H	P	I	V	H	E	G	E	K	L	K	P	V	A	V	H	H	H	L	L
Template Known Secondary structure		G	T		.	.				T	T			T																T	T		S	.	.	.	.						G	G	G											G	G	G		S	S	S					T	T
Template Predicted Secondary structure					.	.																												.	.	.	.
Template SS confidence
		153	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		229	230	.	.	.	.																			.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																										.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	A	D	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	G	K	T	E	G	G	.	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.					.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.
Template Sequence		L	G	L	Q	E	P	P	K	W	P	I	E	S	E	E	E	F	K	E	I	K	A	Q	M	K	M	S	K	S	K	P	Y	S	A	V	F	I	.	.	.	H	D	S	P	E	E	I	R	Q	K	L	R	K	A	F	C	P	A	R	E	V	R	Y	N	P	V	L	D	W	V	E	Y	I	I	F	R	E	E	P	T
Template Known Secondary structure		B		S	S			S	S	S	S			S												B	G	G	G	S		G	G	G	S		B	T	.	.	.	T													S				T	T			S	S										T	T	T	S	S	S	S
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		E	F	T	V	H	R	P	A	K	F	G	G	D	V	T	Y	T	T	F	E	E	L	K	R	D	F	A	E	G	K	L	H	P	L	D	L	K	N	A	V	A	E	Y	L	I	N	L	L	E
Template Known Secondary structure									G	G	G	T						S	S										T	T	S	S																	T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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