Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 11 Aligned Residues 280 % Identity 20% Template c2cybA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with2 l-tyrosine from archaeoglobus fulgidus Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E
Query Conservation
Alig confidence																																							.																																						.	.	.	.	.
Template Conservation																																							.																																						.	.	.	.	.
Template Sequence		R	L	I	T	R	N	A	E	E	V	V	T	E	E	E	L	R	Q	L	I	E	T	K	E	K	P	R	A	Y	V	G	Y	E	P	S	G	E	.	I	H	L	G	H	M	M	T	V	Q	K	L	M	D	L	Q	E	A	G	F	E	I	I	V	L	L	A	D	I	H	A	Y	L	N	E	K	G	.	.	.	.	.
Template Known Secondary structure						T	T		S				T										S		S												S		.		B																T	T															T	T			.	.	.	.	.
Template Predicted Secondary structure																																							.																																						.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I
Query Conservation
Alig confidence		.	.	.	.													.	.	.																																																								.	.	.
Template Conservation		.	.	.	.													.	.	.																																																								.	.	.
Template Sequence		.	.	.	.	T	F	E	E	I	A	E	V	A	D	Y	N	.	.	.	K	K	V	F	I	A	L	G	L	D	E	S	R	A	K	F	V	L	G	S	E	Y	Q	L	S	R	D	Y	V	L	D	V	L	K	M	A	R	I	T	T	L	N	R	A	R	R	S	M	D	E	V	S	R	R	K	.	.	.	E	D	P
Template Known Secondary structure		.	.	.	.													.	.	.							T	T			T	T	T						G	G	G	T	T	T	S														S									T	T	T	T		S		S	.	.	.	S	S
Template Predicted Secondary structure		.	.	.	.													.	.	.																																																								.	.	.
Template SS confidence
						82	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T	E	G	G	A	V	W	L	D	P
Query Conservation
Alig confidence																							.	.	.	.																																																						.	.
Template Conservation																							.	.	.	.																																																						.	.
Template Sequence		M	V	S	Q	M	I	Y	P	L	M	Q	A	L	D	I	A	H	L	G	V	D	.	.	.	.	L	A	V	G	G	I	D	Q	R	K	I	H	M	L	A	R	E	N	L	P	R	L	G	Y	S	S	P	V	C	L	H	T	P	I	L	V	G	L	D	G	Q	K	M	S	S	S	K	G	N	Y	I	S	V	.	.
Template Known Secondary structure			T																T	T		S	.	.	.	.						G	G	G											G	G	G	G	T													B		T	T	S	S	B			T	T	T	T		S		B	T	.	.
Template Predicted Secondary structure																							.	.	.	.																																																						.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.																									.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	.	A	Q	Y	V	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation		.
Template Sequence		.	R	D	P	P	E	E	V	E	R	K	I	R	K	A	Y	C	P	A	G	V	V	E	E	N	P	I	L	D	I	A	K	Y	H	I	L	P	R	F	G	K	I	V	V	E	R	D	A	K	F	G	G	D	V	E	Y	A	S	F	E	E	L	A	E	D	F	K	S	G	Q	L	H	P	L	D	L	K	I	A	V
Template Known Secondary structure		.	T												T	S				T	T			T	T										T						S								G	G	G	T						S	S											T	S	S
Template Predicted Secondary structure		.
Template SS confidence
			226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		304	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	V	T	R	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	Y	L	N	M	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions