Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 13 Aligned Residues 302 % Identity 18% Template c2cyaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	S	S	N	L	I	K	Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G
Query Conservation
Alig confidence										.																																					.
Template Conservation										.																																					.
Template Sequence		V	D	V	E	E	R	F	N	.	R	I	A	R	N	T	V	E	I	V	T	E	E	E	L	K	G	L	L	A	S	G	A	R	I	K	G	Y	I	G	Y	E	P	S	G	V	.	A	H	I	G	W	L	V	W	M	Y	K	V	K	D	L	V	E	A	G	V	D	F	S	V	L	E	A	T	W	H	A	Y	I	N
Template Known Secondary structure										.				T	T		S				T												S												S	S	.		B	T															T	T															T
Template Predicted Secondary structure										.																																					.
Template SS confidence
		4	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Sequence		D	K	L	G	G	D	M	D	L	I	R	A	A	A	R	I	V	R	R	V	.	.	.	.	.	.	.	.	.	.	M	E	A	A	G	V	P	V	E	R	V	R	F	V	D	A	E	E	L	A	S	D	K	D	Y	W	G	L	V	I	R	V	A	K	R	A	S	L	A	R	V	R	R	A	L	.	.	.	.	.
Template Known Secondary structure		T	G	G	G	G																.	.	.	.	.	.	.	.	.	.				T	T			G	G	G											T														T	S							T	T		.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	.	T	K	F	G	K	T
Query Conservation																																																																											.
Alig confidence		.	.																												.	.	.	.																																									.
Template Conservation		.	.																												.	.	.	.
Template Sequence		.	.	A	E	E	A	E	V	D	A	S	K	L	I	Y	P	L	M	Q	V	S	D	I	F	Y	M	D	L	D	.	.	.	.	I	A	L	G	G	M	D	Q	R	K	A	H	M	L	A	R	D	V	A	E	K	L	G	R	K	K	P	V	A	I	H	T	P	I	I	S	S	L	Q	G	P	V	K	M	S	K	S
Template Known Secondary structure		.	.			G	G	G	S		T																T	T		S	.	.	.	.						G	G	G												T	T	T	T													B		S	S				B			S	S
Template Predicted Secondary structure		.	.																												.	.	.	.
Template SS confidence
				153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.											.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300
Predicted Secondary structure					.																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence					.																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		E	G	G	.	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	.	.	.	.	.	.	.	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	.	.	.	.	.	.	.	.	.	.	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	.	K	A	P	R	A	Q
Query Conservation					.																						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																		.
Alig confidence					.					.	.	.															.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																		.
Template Conservation										.	.	.
Template Sequence		K	P	E	T	A	V	F	V	.	.	.	V	D	S	D	D	D	I	R	R	K	I	R	K	A	Y	C	P	A	K	Q	V	Q	G	N	P	V	L	E	I	A	R	Y	I	L	F	A	R	D	G	F	T	L	R	V	D	V	E	Y	T	S	Y	E	E	L	E	R	D	Y	T	D	G	R	L	H	P	L	D	L	K
Template Known Secondary structure		S	G	G	G	S		B	T	.	.	.	T												T	S				T	T			T	T										T	T	T	T	S	T	T										S	S										T	T		S
Template Predicted Secondary structure										.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K	R	I	T	E	C	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	V	A	E	S	L	I	E	V	V	R	P	I	R	G	A	V	L	G	D	P	A	M	K	R	A	L
Template Known Secondary structure																					T	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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