Job Description P0AGJ9 Confidence 98.44% Date Thu Jan 5 11:29:21 GMT 2012 Rank 49 Aligned Residues 245 % Identity 16% Template c2cfoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: non-discriminating glutamyl-trna synthetase from2 thermosynechococcus elongatus in complex with glu Resolution 2.45 Å

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		42	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		P	T	A	D	S	L	H	L	G	H	L	V	.	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S
Query Conservation														.
Alig confidence						.								.																							.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																															.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	G	N	.	L	H	I	G	T	A	R	T	A	V	F	N	W	L	Y	A	R	H	R	G	G	K	F	I	L	R	I	E	D	T	.	.	.	.	.	D	R	E	R	S	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	T	E	N	I	L	E	G	L	Q	W	L	G	L	T	W	D	E
Template Known Secondary structure		T	T	S		.		B																	T	T											.	.	.	.	.	S	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T				S
Template Predicted Secondary structure						.																															.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.															.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	Y	F	Q	S	D	R	L	D	L	Y	R	Q	A	I	Q	T	L	L	D	K	G	L	A	Y	Y	C	Y	C	T	P	E	E	L	E	A	L	R	A	E	Q	K	A	K	G	Q	A	P	R	Y	D	N	R	H	R	H	L	T	P	E	E	Q	A	A	F	E	A	A	G	R	T	P	V	I	R	F	K	I	E
Template Known Secondary structure						G	G	G															T	T	S																						T			S	S				T	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
																															163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		D	D	R	Q	I	E	W	Q	D	L	V	R	G	R	V	S	W	Q	G	A	D	L	G	G	D	M	V	I	A	R	A	A	P	R	G	E	I	G	Y	P	L	Y	N	L	V	V	V	V	D	D	I	A	M	.	.	.	.	G	I	T	D	V	I	R	G	E	D	H	I	G	N	T	P	K	Q	I	L	L	Y	E
Template Known Secondary structure		T	T								T	T	T							G	G	G	G		S	S						S			T	T	S				B													T	.	.	.	.	T		S						G	G	G	T	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																				.	.	.	.						.	.	.	.	.												.	.	.	.	.
Query SS confidence																															.	.																				.	.	.	.						.	.	.	.	.												.	.	.	.	.
Query Sequence		R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T	E	G	G	.	.	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	.	.	.	.	N	T	A	D	A	.	.	.	.	.	D	V	Y	R	F	L	K	F	F	T	F	.	.	.	.	.
Query Conservation																															.	.																				.	.	.	.						.	.	.	.	.												.	.	.	.	.
Alig confidence																															.	.																				.	.	.	.						.	.	.	.	.												.	.	.	.	.
Template Conservation
Template Sequence		A	L	G	A	T	P	P	N	F	A	H	T	P	L	I	L	N	S	T	G	Q	K	L	S	K	R	D	G	V	T	S	I	S	D	F	R	A	M	G	Y	L	A	P	A	L	A	N	Y	M	T	L	L	G	W	S	P	P	E	G	V	G	E	L	F	T	L	D	L	A	A	K	H	F	S	F	E	R	I	N	K
Template Known Secondary structure			T	T															S	S	S	S	B			T	T	S	S			B							T	T													T	T	B				T	T	T		S													S	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
						278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		A	G	A	R	F	D	W	D	K	L	N	W	L	N	R	Q	Y	I	Q	Q	L	E	P	E	E	F	L	A	E	L	I	P	L	W	Q	G	A
Template Known Secondary structure		S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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