Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 29 Aligned Residues 271 % Identity 20% Template c1yi8C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl trrna synthetase ii from deinococcus2 radiodurans in complex with l-trp Resolution 2.10 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L
Query Conservation
Alig confidence															.																																						.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation															.																																						.	.	.	.	.	.	.	.	.													.	.	.
Template Sequence		R	P	R	V	L	T	G	D	R	P	T	G	A	.	L	H	L	G	H	L	A	G	S	L	Q	N	R	V	R	L	Q	D	E	A	E	L	F	V	L	L	A	D	V	Q	A	L	T	D	H	F	D	.	.	.	.	.	.	.	.	.	R	P	E	Q	V	R	E	N	V	L	A	V	.	.	.	A	L	D	Y	L
Template Known Secondary structure			S									S	S		.		B							T											S																T	T	.	.	.	.	.	.	.	.	.													.	.	.
Template Predicted Secondary structure															.																																						.	.	.	.	.	.	.	.	.													.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.										.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V
Query Conservation
Alig confidence																																																				.																											.	.	.
Template Conservation																																																				.																											.	.	.
Template Sequence		A	A	G	L	D	P	Q	K	T	T	C	V	V	Q	S	A	V	P	E	L	A	E	L	T	V	Y	F	L	N	L	V	T	V	S	H	L	R	Q	N	P	T	V	K	A	E	I	A	Q	K	G	.	Y	G	E	R	V	P	A	G	F	F	V	Y	P	V	S	Q	A	A	D	I	A	A	F	G	A	T	.	.	.
Template Known Secondary structure				T			T	T	T						G	G	G		T											T	T	S																			T	.		T	T								T													T		S	.	.	.
Template Predicted Secondary structure																																																				.																											.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.									.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.																	.
Query SS confidence																												.	.	.	.	.	.	.	.																	.
Query Sequence		V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	.	.	.	.	.	.	.	.	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	.	K	F	G	K	T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T
Query Conservation																												.	.	.	.	.	.	.	.																	.
Alig confidence		.																										.	.	.	.	.	.	.	.																	.													.	.	.
Template Conservation		.																																																															.	.	.
Template Sequence		.	L	V	P	V	G	D	D	Q	L	P	M	L	E	Q	T	R	E	I	V	R	R	F	N	A	L	Y	A	P	V	L	A	E	P	Q	A	Q	L	S	R	V	P	R	L	P	G	L	D	G	Q	A	K	M	S	K	S	L	G	N	A	I	A	L	.	.	.	G	D	S	A	D	E	V	A	R	K	V	M	G	M
Template Known Secondary structure		.						T	T	T																		S		S		S										S	S					T	T	S		S				T	T	T	T				B	T	.	.	.	T												T
Template Predicted Secondary structure		.																																																															.	.	.
Template SS confidence
			165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240
																	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	.	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.
Template Sequence		Y	T	D	P	G	H	L	R	A	S	D	P	G	R	V	E	G	N	P	V	F	T	F	L	D	A	F	D	P	.	D	P	A	R	V	Q	A	L	K	D	Q	Y	R	A	G	G	L	G	D	V	K	V	K	K	H	L	I	D	V	L	N	G	V	L	A	P	I	R	T	R	R	A	E	Y	E	R	D	P	D	A
Template Known Secondary structure					T	T			S	T	T	S					T	T												S	.															S	S
Template Predicted Secondary structure																															.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
							314	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	E	G	L	Q	A	A	K	R	I	T	E
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		V	L	R	F	V	T	E	G	T	A	R	G	R	E	V	A	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions