Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 23 Aligned Residues 299 % Identity 16% Template c1r6uB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity Resolution 2.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																									.																																	.
Query SS confidence																									.																																	.
Query Sequence		L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	.	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	.	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A
Query Conservation																									.																																	.
Alig confidence																									.																																	.																				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		F	L	R	R	G	I	F	F	S	H	R	D	X	N	Q	V	L	D	A	Y	E	N	K	K	P	F	Y	L	Y	T	G	R	G	P	S	S	E	A	X	H	V	G	H	L	I	P	F	I	F	T	K	W	L	Q	D	V	F	N	V	P	L	V	I	Q	X	T	D	D	E	K	Y	L	W	K	D	L	.	.	.	.
Template Known Secondary structure		T	G	G	G	T	S	S					S										T	T													S	S			B	G	G	G															T																S	S		.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	.	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N	R	E	D	Q
Query Conservation																																																	.
Alig confidence		.	.	.	.	.													.	.	.																												.																						.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.													.	.	.																																																		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	T	L	D	Q	A	Y	G	D	A	V	E	N	.	.	.	A	K	D	I	I	A	C	G	F	D	I	N	K	T	F	I	F	S	D	L	D	Y	X	G	X	S	S	G	F	Y	K	N	V	V	K	I	Q	K	H	V	T	F	N	Q	V	K	G	I	F	.	.	.	.	.	.	.	G	F	T	D
Template Known Secondary structure		.	.	.	.	.													.	.	.							T	T			T	T	S										G	G	G		S	S											T											.	.	.	.	.	.	.				T
Template Predicted Secondary structure		.	.	.	.	.													.	.	.																																																		.	.	.	.	.	.	.
Template SS confidence
							207	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																																																			.	.
Query SS confidence																							.	.	.	.	.	.	.																																																			.	.
Query Sequence		G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	.	.	.	.	.	.	.	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	.	.
Query Conservation																							.	.	.	.	.	.	.																																																			.	.
Alig confidence																							.	.	.	.	.	.	.																																																			.	.
Template Conservation
Template Sequence		S	D	C	I	G	K	I	S	F	P	A	I	Q	A	A	P	S	F	S	N	S	F	P	Q	I	F	R	D	R	T	D	I	Q	C	L	I	P	C	A	I	D	Q	D	P	Y	F	R	X	T	R	D	V	A	P	R	I	G	Y	P	K	P	A	L	L	H	S	T	F	F	P	A	L	Q	G	P	N	S	S	I	F
Template Known Secondary structure		T	S													G	G	G	S	G	G	G						T	T				S								G	G	G														T	T															S					S	S		B
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
										238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																													.
Query SS confidence		.	.	.	.	.	.	.	.																																																													.
Query Sequence		.	.	.	.	.	.	.	.	K	T	E	G	G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	.	R	A	Q	Y	V	L	A	E	Q	V	T
Query Conservation		.	.	.	.	.	.	.	.																																																													.
Alig confidence		.	.	.	.	.	.	.	.																																							.																						.
Template Conservation																																																.
Template Sequence		L	T	D	T	A	K	Q	I	K	T	K	V	N	K	H	A	F	S	G	G	R	D	T	I	E	E	H	R	Q	F	G	G	N	C	D	V	D	V	S	F	X	Y	L	T	F	F	.	L	E	D	D	D	K	L	E	Q	I	R	K	D	Y	T	S	G	A	X	L	T	G	E	L	K	K	A	L	I	E	V	L	Q
Template Known Secondary structure		T	T														S				S		S	S											T	T	T											.																	T	S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		309	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		R	L	V	H	G	.	E	E	G	L	Q	A	A	K	R	I	T	E	C	L	F
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		P	L	I	A	E	H	Q	A	R	R	K	E	V	T	D	E	I	V	K	E	F
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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