Job Description P0AGJ9 Confidence 100.00% Date Thu Jan 5 11:29:21 GMT 2012 Rank 2 Aligned Residues 405 % Identity 25% Template c1h3eA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	N	L	I	K	Q	L	Q	E	R	G	L	V	A	Q	V	T	D	E	E	A	L	A	E	R	L	A	Q	G	P	I	A	L	Y	C	G	F	D	P	T	A	D	S	L	H	L	G	H	L	V	P	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	E	E	A	L	A	L	L	K	R	G	A	E	E	I	V	P	E	E	E	L	L	A	K	L	K	E	G	R	P	L	T	V	K	L	G	A	D	P	T	R	P	D	L	H	L	G	H	A	V	V	L	R	K	M	R	Q	F	Q	E	L	G	H	K	V	V	L	I	I	G	D	F	T	G	M	I	G	D	P
Template Known Secondary structure												T	T		S				T										T		S											S	S	S			B															T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N	S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	V	K	Q	R	L	N
Query Conservation
Alig confidence																															.	.																												.
Template Conservation																															.	.																												.
Template Sequence		S	G	R	S	K	T	R	P	P	L	T	L	E	E	T	R	E	N	A	K	T	Y	V	A	Q	A	G	K	I	.	.	L	R	Q	E	P	H	L	F	E	L	R	Y	N	S	E	W	L	E	G	L	T	F	K	E	V	V	R	.	L	T	S	L	M	T	V	A	Q	M	L	E	R	E	D	F	K	K	R	Y	E
Template Known Secondary structure		S	S		S	S																						T	T	T	.	.	S				T	T	T						T					T	T									.		G	G	G	S						T	T	S
Template Predicted Secondary structure																															.	.																												.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		R	E	D	Q	G	I	S	F	T	E	F	S	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	Q	V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	.	K	F	G	K	T	E	G
Query Conservation																																																																										.
Alig confidence		.																											.	.	.	.																																										.
Template Conservation		.																											.	.	.	.
Template Sequence		.	A	G	I	P	I	S	L	H	E	L	L	Y	P	F	A	Q	A	Y	D	S	V	A	I	R	A	D	.	.	.	.	V	E	M	G	G	T	D	Q	R	F	N	L	L	V	G	R	E	V	Q	R	A	Y	G	Q	S	P	Q	V	C	F	L	M	P	L	L	V	G	L	D	G	R	E	K	M	S	K	S	L	D
Template Known Secondary structure		.	T	T					G	G	G	G	T												T	T		S	.	.	.	.						G	G	G														T	T													B		T	T	S	S	S	B			T	T	T	T
Template Predicted Secondary structure		.																											.	.	.	.
Template SS confidence
			164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	W	L	D	P	K	K	T	S	P	Y	K	F	Y	Q	F	W	I	N	T	A	D	A	D	V	Y	R	F	L	K	F	F	T	F	M	S	I	E	E	I	N	A	L	E	E	E	D	K	N	S	G	K	A	P	R	A	Q	Y	V	L	A	E	Q	V	T	R	L	V	H	G	E	E	G	L	Q	A	A	K
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		N	Y	I	G	L	T	.	.	.	E	P	P	E	A	M	F	K	K	L	M	R	V	P	D	P	L	L	P	S	Y	F	R	L	L	T	D	L	E	E	E	E	I	E	A	L	L	K	A	G	P	V	P	A	H	R	V	L	A	R	L	L	T	A	A	Y	A	L	P	Q	I	P	P	R	I	D	R	A	F	Y	E
Template Known Secondary structure					B	T	T	.	.	.	S										T	T	S		G	G	G																																							T	T	S	S	S			S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		239	240	.	.	.	.				.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.													.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		R	I	T	E	C	L	F	S	G	S	L	S	A	L	S	E	A	D	F	E	Q	L	A	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	G	V	P	M	V	E	M	E	K	G	A	.	.	.	.	.	.	D	L	M	Q	A	L	V	D	S	E	L	Q	P	S	R	G	Q	A	R	K	T	I	A	S	N	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	G	Y	A	W	E	A	F	G	R	D	K	E	A	G	P	E	E	V	R	R	A	E	A	R	Y	D	E	V	A	K	G	G	I	P	E	E	I	P	E	V	T	I	P	A	S	E	L	K	E	G	R	I	W	V	A	R	L	F	T	L	A	G	L	T	P	S	N	A	E	A	R	R	L	I	Q	N	R	G
Template Known Secondary structure			T	T			G	G	G	T	T			T	T	S	S		T	T														T				S	S								G	G	G		B	T	T	B										T	T	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	I	N	G	E	K	Q	S	D	P	E	Y	F	F	K	E	E	D	R	L	F	G	R	F	T	L	L	R	R	G	K	K	N	Y	C	L	I	C	W
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		L	R	L	D	G	E	V	L	T	D	P	M	L	Q	V	D	.	.	.	.	.	L	S	R	P	R	I	L	Q	R	G	K	D	R	F	V	R	V	R	L
Template Known Secondary structure					T	T						T	T					.	.	.	.	.		S	S							T	T	T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.						.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430