Job Description P76142 Confidence 100.00% Date Thu Jan 5 12:19:35 GMT 2012 Rank 6 Aligned Residues 300 % Identity 12% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																		.																								.	.	.
Query SS confidence																					.	.	.	.																		.																								.	.	.
Query Sequence		R	F	K	K	I	A	L	L	S	A	L	G	I	A	A	I	S	M	N	.	.	.	.	V	Q	A	A	E	R	I	A	F	I	P	K	L	V	G	V	G	.	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	T	Y	D	.	.	.	G	P	T	E	P	S	V	S	G	Q	V	Q	L
Query Conservation																					.	.	.	.																		.																								.	.	.
Alig confidence																					.	.	.	.																		.																								.	.	.
Template Conservation
Template Sequence		E	Q	R	N	L	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I	N	Y	Q	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S
Template Known Secondary structure																S						S	S			S	S												S	S																		T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	K	.	.	.	.	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K
Query Conservation																																														.	.	.	.
Alig confidence																																														.	.	.	.																														.
Template Conservation																																																																															.
Template Sequence		L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	.	K	H
Template Known Secondary structure								T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S																						S		.	T	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A
Query Conservation
Alig confidence														.																	.
Template Conservation														.																	.
Template Sequence		T	Y	Y	S	V	L	Y	F	S	E	G	Y	.	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	.	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L
Template Known Secondary structure										S	T	T		.																	.													S	S																			S					S	S
Template Predicted Secondary structure														.																	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	L	K	N	D	K	V	A	I	V	G	F	S	T	P	N	V	M	R	P	Y	V	E	R	G	T	V	K	E	F	G	L	W	D	V	V	Q	Q	G	K	I	S	V	Y	V	A	D	A	L	L	K	K	G	S	M	K	T	G	D	K	L	D	I	K	G	V	G	Q	V	E	V	S	P	N	S	V	Q	G	Y
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	L	G	R	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	P	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T		T	T	S			B		S	B												T	S	S								T																T	T					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	E	A	D	G	N	G	I	V	L	L	P	E	R	V	I	F	N	K	E	N	I	G	K	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	Y	S	G	D	F	E	I	V	T	K	A	D	S	P	E	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.										T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions