Job Description P76142 Confidence 98.94% Date Thu Jan 5 12:19:35 GMT 2012 Rank 81 Aligned Residues 216 % Identity 16% Template c3t0nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 Resolution 2.22 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																		.	.																						.	.	.	.	.	.
Query SS confidence																		.	.																						.	.	.	.	.	.
Query Sequence		V	Q	A	A	E	R	I	A	F	I	P	K	L	V	G	V	.	.	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	.	.	.	.	.	.	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P
Query Conservation																		.	.																						.	.	.	.	.	.
Alig confidence																		.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	D	T	F	K	V	G	L	I	V	P	X	T	G	G	Q	A	S	T	G	K	Q	I	D	N	A	I	K	L	Y	I	K	K	H	G	D	T	V	A	G	K	K	I	E	V	I	L	K	D	D	A	A	I	P	D	N	T	K	R	L	A	Q	E	L	I	V	N	D	K	V	N	V	I	A	G	F	G	I	T
Template Known Secondary structure			T	T										S	S	S	T	T																				S			T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		D	G	L	C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	.	.	.	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K
Query Conservation																					.	.	.
Alig confidence																					.	.	.																																		.	.	.											.	.
Template Conservation																																																									.	.	.											.	.
Template Sequence		P	A	A	L	A	A	A	P	L	A	T	Q	A	K	V	P	E	I	V	X	A	A	G	T	S	I	I	T	E	R	S	P	Y	I	V	R	T	S	F	T	L	A	Q	S	S	I	I	I	G	D	W	A	A	K	N	.	.	.	G	I	K	K	V	A	T	L	T	S	.	.	D	Y	A	P	G	N	D	A	L	A
Template Known Secondary structure															T						S	S				G	G	G	G	G	G		T	T				S	S																	T	.	.	.	T										.	.	S	S
Template Predicted Secondary structure																																																									.	.	.											.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		E	A	K	A	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	.	.	N	D	K	V	A	I	V	G	F	S	T
Query Conservation																																																																		.	.
Alig confidence											.	.																																.																						.	.
Template Conservation											.	.																																.
Template Sequence		F	F	K	E	R	F	T	A	G	.	.	G	G	E	I	V	E	E	I	K	V	P	L	A	N	P	D	F	A	P	F	L	Q	R	X	K	D	A	K	P	D	A	.	X	F	V	F	V	P	A	G	Q	G	G	N	F	X	K	Q	F	A	E	R	G	L	D	K	S	G	I	K	V	I	G	P	G	D
Template Known Secondary structure										T	.	.	T											S	S	S													S			S		.							T	T												T	T	G	G	G	T	T							G	G
Template Predicted Secondary structure											.	.																																.
Template SS confidence
		182	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions