Phyre 2 alignment of P76142 with c3opyE

Job Description P76142
Confidence 87.11% Date Thu Jan 5 12:19:35 GMT 2012

Rank 125 Aligned Residues 252

% Identity 13% Template c3opyE_

PDB info PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state

Resolution 3.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	M	N	V	Q	A	A	E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	T	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	P	D	F	E	G	K	K	K	I	A	I	I	T	S	G	G	D	A	P	G	M	N	A	A	V	R	A	V	T	R	A	G	I	F	Y	G	C	K	V	Y	A	C	Y	E	G	Y	T	G	L	V	K	G	G	D	M	L	K	E	L	Q	W	Q	D	V	R	G	L	L	S	I	G	G	T	I	I	G	T	A	R
Template Known Secondary structure							S									S	S			T	T															T	T								T							S		S	T	T						T	T	T	T	T	T	G	G	G			S		S	S
Template Predicted Secondary structure
Template SS confidence
	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

	64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.													.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.
Predicted Secondary structure																																		.									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																																		.									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	.	G	L	C	P	A	L	K	R	.	.	.	.	.	.	.	.	.	.	.	.	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	.	.	Y	Y	I
Query Conservation																																		.									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																																		.									.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence	C	K	E	F	R	E	R	W	G	R	L	Q	A	C	Y	N	M	V	S	N	G	I	D	A	L	V	V	C	G	G	D	G	S	L	T	G	A	D	L	F	R	K	E	W	P	E	L	I	K	E	K	E	Q	Y	E	T	H	R	N	L	T	I	V	G	L	V	G	S	I	D	N	D	M	C	G	T	D	S	T	I
Template Known Secondary structure	S	S	S	T	T	S														T	T																							T	T												T	T	S										S	S				T	T		S
Template Predicted Secondary structure
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L
Query Conservation
Alig confidence																						.												.	.	.	.	.	.	.
Template Conservation																						.												.	.	.	.	.	.	.
Template Sequence	G	A	Y	S	S	L	E	R	I	I	E	L	V	D	Y	I	D	A	T	A	A	.	S	H	S	R	A	F	V	V	E	V	M	.	.	.	.	.	.	.	G	R	H	C	G	W	L	G	L	M	S	G	I	A	T	G	A	D	Y	I	F	I	P	E	R	P	P	S	E	S	N	W	K	D	D	L	K	K	V	C
Template Known Secondary structure																		S	S			.		T	T									.	.	.	.	.	.	.		S	S		T											T		S					T	T	S				T	T	T
Template Predicted Secondary structure																						.												.	.	.	.	.	.	.
Template SS confidence
	372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.								.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

	209	210				.	.	.	.	.	.	.	.	.	220	.	.	.										.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure			.	.	.														.	.	.	.	.	.	.	.	.																.
Query SS confidence			.	.	.														.	.	.	.	.	.	.	.	.																.
Query Sequence	K	A	.	.	.	Y	S	D	L	D	A	I	I	A	P	D	A	N	.	.	.	.	.	.	.	.	.	A	L	P	A	A	A	Q	A	A	E	N	L	K	N	D	.	K	V	A	I	V	G	F	S	T	P	N	V	M	R	P	Y	V	E	R	G	T	V	K	E	F	G	L	W	D	V	V	Q	Q	G	K	I	S
Query Conservation			.	.	.														.	.	.	.	.	.	.	.	.																.
Alig confidence			.	.	.														.	.	.	.	.	.	.	.	.																.							.	.	.	.	.	.	.	.	.						.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.						.	.
Template Sequence	L	R	H	R	E	K	G	R	R	K	T	T	V	I	V	A	E	G	A	I	D	D	Q	L	N	P	I	T	S	E	E	V	K	D	V	L	V	E	I	G	L	D	T	R	I	T	R	L	G	.	.	.	.	.	.	.	.	.	H	V	Q	R	G	.	.	G	A	P	C	A	F	D	R	F	L	A	T	V	Q	G
Template Known Secondary structure						T	T										T	T		B		T	T	S		B												T	T	T									G	.	.	.	.	.	.	.	.	.	G	G	G	G		.	.	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.						.	.
Template SS confidence
	444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.										.	.	.	.	.			.	.	500	.	.	.	.	.	.	.	.	.	510	.	.

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	V	A	D	A	L	L	K	K	G	S	M	K	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	D	A	V	R	A	V	L	E	S	T	P	A	I	P	S
Template Known Secondary structure									T			T	T	S
Template Predicted Secondary structure
Template SS confidence
	513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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