Return to main results Retrieve Phyre Job Id

Job DescriptionP76142
Confidence100.00%DateThu Jan 5 12:19:35 GMT 2012
Rank11Aligned Residues276
% Identity19%Templatec3o1hB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60... ......70.........80.........90.........100......
Predicted Secondary structure 








.












Query SS confidence 



































.










































Query Sequence  ERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYD. GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAM
Query Conservation   

  
       
      
   

   
  
   .     
   
   
   
    
 


           
  
 
Alig confidence 



































.










































Template Conservation    
 
  
 
    
  
  
    
   
  
         
   
   
   
    




                
Template Sequence  EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV
Template Known Secondary structure 
S


STT

SSTT
TT
S

SSTTTTTTTT
Template Predicted Secondary structure 























Template SS confidence 















































































   31........40.........50.........60.........70.........80.........90.........100.........110
 
   107..110...... ...120.........130.........140.........150.........160.........170.........180...
Predicted Secondary structure 


...






















Query SS confidence 









. . .


































































Query Sequence  QRGVRVLTWD. . . SDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHP
Query Conservation    




  
...               
    
      
             
 
         
  
          
Alig confidence 









...




































..
























..
Template Conservation       

                  
  
    
      
         .. 
            
  
       .. 
Template Sequence  GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSG. . KTNIALLLGPRTKPVTTGFYEAIKN. . S
Template Known Secondary structure  TT


SS




TTTTTS


TS
TTS
..




SS..S
Template Predicted Secondary structure 



















..





..
Template SS confidence 















































































   111........120.........130.........140.........150.........160 .........170.........180..... .
 
   184.....190.........200.........210.........220.........230...... ...240.........250.........260..
Predicted Secondary structure 
















.








Query SS confidence 




















































.

























Query Sequence  GWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLK. NDKVAIVGFSTPNVMRPYVERGTVKE
Query Conservation   
              
       
   

   
    
  
 

  

   
.   
 
 
 
        
  
   
Alig confidence 
























.









.















.

























Template Conservation                         

.       
  .    
     

   
    
 


 
        
  
    
Template Sequence  DIHIVDSFWADNDKELQRNLVQRVI. DMGNIDYIVG. SAVAIEAAISELRSADKTHDIGLVSVYLSHGVYRGLLRNKVLF
Template Known Secondary structure  S

S
.T


S.
TS
TTTSSS

TTTTS

B
Template Predicted Secondary structure 





.




.















Template SS confidence 















































































   191........200.........210..... ....220..... ....230.........240.........250.........260........
 
   263......270.........280.........290.........300.........310.........320.........330.........340
Predicted Secondary structure 












































Query SS confidence 













































































Query Sequence  FGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVGQVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKYDF
Query Conservation 
        
      
   
 
                                            

 



 
  
Alig confidence 




























...............................

















Template Conservation 

 
     
  

      
 
      ...............................       

  

     
Template Sequence  APTDKMVQQGRLSVMQAAHYLRHQPYEKQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ASPIIKPLTPKTLHDDTI
Template Known Secondary structure 

TT



T...............................




GGG

Template Predicted Secondary structure 









...............................



Template SS confidence 













































































   269270.........280.........290....... ..300.........310.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions