Job Description P76142 Confidence 98.22% Date Thu Jan 5 12:19:35 GMT 2012 Rank 91 Aligned Residues 214 % Identity 14% Template c3n0xA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution Resolution 1.50 Å

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		29	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																		.	.	.	.	.	.	.	.					.
Query SS confidence													.	.																		.	.	.	.	.	.	.	.					.
Query Sequence		R	I	A	F	I	P	K	L	V	G	V	.	.	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	.	.	.	.	.	.	.	.	G	V	D	V	.	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G
Query Conservation													.	.																		.	.	.	.	.	.	.	.					.
Alig confidence													.	.																		.	.	.	.	.	.	.	.					.
Template Conservation
Template Sequence		K	I	A	L	I	Y	G	K	T	G	P	L	E	A	Y	A	K	Q	T	E	T	G	L	X	X	G	L	E	Y	A	T	K	G	T	X	T	L	D	G	R	K	I	V	V	I	T	K	D	D	Q	S	K	P	D	L	S	K	A	A	L	A	E	A	Y	Q	D	D	G	A	D	I	A	I	G	T	S	S	S	A	A
Template Known Secondary structure										S	S	T	T																			T	T	T					T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		L	C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	.	.	.	.	.	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																										.	.	.	.												.	.
Template Conservation																																																						.	.	.	.												.	.
Template Sequence		A	L	A	D	L	P	V	A	E	E	N	K	K	I	L	I	V	E	P	A	V	A	D	Q	I	T	G	E	K	W	N	R	Y	I	F	R	T	G	R	N	S	S	Q	D	A	I	S	N	A	V	A	I	.	.	.	.	G	K	Q	G	V	T	I	A	T	L	A	.	.	Q	D	Y	A	F	G	R	D	G	V	A
Template Known Secondary structure													T							S				G	G	G	G	T	T	T			T	T					S															.	.	.	.			T	T								.	.		S	S
Template Predicted Secondary structure																																																						.	.	.	.												.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																				.
Query SS confidence															.																																																				.
Query Sequence		E	A	K	A	K	I	A	K	E	H	P	G	W	.	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	.	N	D	K	V	A	I	V	G	F	S	T	P
Query Conservation															.																																																				.
Alig confidence															.																																																				.
Template Conservation
Template Sequence		A	F	K	E	A	L	A	K	T	G	A	T	L	A	T	E	E	Y	V	P	T	T	T	T	D	F	T	A	V	G	Q	R	L	F	D	A	L	K	D	K	P	G	K	K	I	I	W	V	I	W	A	G	G	G	D	P	L	T	K	L	Q	D	X	D	P	K	R	Y	G	I	E	L	S	T	G	G	N	I
Template Known Secondary structure								T	T	T	T											T	T																T	T		S	S										S	S	S									T		G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions