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Job DescriptionP76142
Confidence100.00%DateThu Jan 5 12:19:35 GMT 2012
Rank18Aligned Residues268
% Identity14%Templatec3l6uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  IAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRG
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Template Sequence  VGFTIVNDKHEFAQRLINAFKAEAKANKYEALVA. TSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAG
Template Known Secondary structure  S
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Query Sequence  VRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQ. . . . VNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGW
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Template Sequence  IPVFAIDRXIRSDAVVSSIT. SNNQXIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIEN. EPTL
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   90.........100......... 110.........120.........130.........140.........150.........160... ....
 
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Query Sequence  EIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGL
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Template Sequence  SIVDSVSGNYDPVTSERVXRQVIDSGIPFDAVYCHNDDIAXGVLEALKKAKISGKIVVGIDGNRAILEAVDXKSXDATVV
Template Known Secondary structure 
TT
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   266...270.........280.........290.........300.........310.........320.........330.
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Query Sequence  WDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVGQVEVSPNSVQGYDYEADGNGIVLLPERVIFN
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Template Sequence  QSAEEXXKVAFSALKLHTKNKKIPDR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FYTYSYLYD
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   248.250.........260.........270... ......280..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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