Job Description P76142 Confidence 99.98% Date Thu Jan 5 12:19:35 GMT 2012 Rank 37 Aligned Residues 264 % Identity 17% Template c3kkeA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis Resolution 2.20 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M	Q	R
Query Conservation
Alig confidence																																					.																																					.	.
Template Conservation																																					.																																					.	.
Template Sequence		T	I	G	L	I	V	P	D	V	N	N	A	V	F	A	D	M	F	S	G	V	Q	M	A	A	S	G	H	S	T	D	V	L	L	G	.	Q	I	D	A	P	P	R	G	T	Q	Q	L	S	R	L	V	S	E	G	R	V	D	G	V	L	L	Q	R	R	E	D	F	D	D	D	M	.	.	L	A	A	V	L	E
Template Known Secondary structure								S		T	T	S	T	T															T	T							.				S	T	T												S		S	S	S								T	T						.	.						T
Template Predicted Secondary structure																																					.																																					.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E	H	P	G	W	E	I	V
Query Conservation
Alig confidence															.	.	.																								.	.	.
Template Conservation															.	.	.																								.	.	.
Template Sequence		G	V	P	A	V	T	I	N	S	R	V	P	G	.	.	.	R	V	G	S	V	I	L	D	D	Q	K	G	G	G	I	A	T	E	H	L	I	T	L	.	.	.	G	H	S	R	I	A	F	I	S	G	T	A	I	H	D	T	A	Q	R	R	K	E	G	Y	L	E	T	L	A	S	A	G	L	R	S	E	A	A
Template Known Secondary structure		T	S						S				T	T	.	.	.																							T	.	.	.	T			S						S		S	S																		T	T					G	G
Template Predicted Secondary structure															.	.	.																								.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																					.	.	.	.	.																															.	.	.
Query SS confidence																					.	.	.	.	.																															.	.	.
Query Sequence		T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	.	.	.	.	.	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	N	.	.	.	D	K	V	A	I	V	G	F	S	T	P	N	V	M	R	P	Y	V	E	R	G	T	V
Query Conservation																					.	.	.	.	.																															.	.	.
Alig confidence																					.	.	.	.	.																															.	.	.															.	.
Template Conservation																																																																									.	.
Template Sequence		W	V	V	D	A	G	W	E	A	D	A	G	S	A	A	L	N	T	L	Y	R	G	A	N	L	G	K	P	D	G	P	T	A	V	V	V	A	S	V	N	A	A	V	G	A	L	S	T	A	L	R	L	G	L	R	V	P	E	D	L	S	I	V	G	I	N	T	T	W	V	S	.	.	D	T	V	Y	P	A	L
Template Known Secondary structure		G						S	S																	T	T	S	T	T	S		S					S	S														T	T			T	T	T	T							S						.	.			S	S	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	F	G	L	W	D	V	V	Q	Q	G	K	I	S	V	Y	V	A	D	A	L	L	K	K	G	S	M	K	T	G	D	K	L	D	I	K	G	V	G	Q	V	E	V	S	P	N	S	V	Q	G	Y	D	Y	E	A	D	G	N	G	I	V	L	L	P	E	R	V	I	F	N	K	E
Query Conservation
Alig confidence			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	.	T	V	R	L	P	L	Q	R	L	G	E	V	A	A	D	V	L	M	E	H	L	G	G	R	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	T	V	V	T	Q	P	T	P	E	L	L	V	R	E
Template Known Secondary structure			.																						T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S								S
Template Predicted Secondary structure			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		292		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.																														.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions