Job Description P76142 Confidence 63.95% Date Thu Jan 5 12:19:35 GMT 2012 Rank 191 Aligned Residues 168 % Identity 8% Template c3jpyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2; PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b Resolution 3.21 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																.	.																														.	.	.	.	.
Query SS confidence																																.	.																														.	.	.	.	.
Query Sequence		V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	.	.	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	.	.	.	.	.	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T
Query Conservation																																.	.																														.	.	.	.	.
Alig confidence																																.	.																														.	.	.	.	.
Template Conservation
Template Sequence		E	L	V	A	M	N	E	T	D	P	K	S	I	I	T	R	I	C	D	L	M	S	D	R	K	I	Q	G	V	V	F	A	D	D	T	D	Q	E	A	I	A	Q	I	L	D	F	I	S	A	Q	T	L	T	P	I	L	G	I	H	G	G	S	S	M	I	M	A	D	K	D	E	S	S	M	F	F	Q	F	G	P
Template Known Secondary structure							S			S															S			S								S			T													T	T								S	G	G	G	S				S			T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S
Query Conservation
Alig confidence																					.	.								.	.																																					.	.	.	.	.
Template Conservation																					.	.								.	.																																					.	.	.	.	.
Template Sequence		S	I	E	Q	Q	A	S	V	M	L	N	I	M	E	E	Y	D	W	Y	.	.	I	F	S	I	V	T	T	.	.	Y	F	P	G	Y	Q	D	F	V	N	K	I	R	S	T	I	E	N	S	F	V	G	W	E	L	E	E	V	L	L	L	D	M	S	S	K	.	.	.	.	.	I	Q	N	Q	L	K	K	L	Q
Template Known Secondary structure																	T	T			.	.								.	.	S	S	T	T														T		S	S															T	.	.	.	.	.						T	T
Template Predicted Secondary structure																					.	.								.	.																																					.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	I	I	L	L	Y	C	T	K	E	E	A	T	Y	I	F	E	V	A	N	S	V	G
Template Known Secondary structure			S						S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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